LOCUS       WQZ29565.1               872 aa    PRT              BCT 29-DEC-2023
DEFINITION  Helicobacter pylori valine--tRNA ligase protein.
ACCESSION   CP079244-1048
PROTEIN_ID  WQZ29565.1
SOURCE      Helicobacter pylori
  ORGANISM  Helicobacter pylori
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Helicobacteraceae; Helicobacter.
REFERENCE   1  (bases 1 to 1570870)
  AUTHORS   Thorell,K., Munoz-Ramirez,Z.Y., Wang,D., Sandoval-Motta,S., Boscolo
            Agostini,R., Ghirotto,S., Torres,R.C., Falush,D., Camargo,M.C. and
            Rabkin,C.S.
  CONSRTM   HpGP Research Network
  TITLE     The Helicobacter pylori Genome Project: insights into H. pylori
            population structure from analysis of a worldwide collection of
            complete genomes
  JOURNAL   Nat Commun 14 (1), 8184 (2023)
   PUBMED   38081806
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570870)
  AUTHORS   Camargo,M.C. and Rabkin,C.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUL-2021) IIB, National Cancer Institute, 9609
            Medical Center Dr., Rm. 6E110, Bethesda, MD 20892, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: HGAP v. 4
            Assembly Name          :: HpGP-TWN-021
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 2661x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 07/16/2021 08:12:09
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 5.2
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,497
            CDSs (total)                      :: 1,452
            Genes (coding)                    :: 1,391
            CDSs (with protein)               :: 1,391
            Genes (RNA)                       :: 45
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 36
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 44 of 61
            Pseudo Genes (incomplete)         :: 11 of 61
            Pseudo Genes (internal stop)      :: 18 of 61
            Pseudo Genes (multiple problems)  :: 12 of 61
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Helicobacter pylori"
                     /mol_type="genomic DNA"
                     /strain="HpGP-TWN-021"
                     /isolation_source="Biopsy"
                     /host="Homo sapiens"
                     /db_xref="taxon:210"
                     /geo_loc_name="Taiwan"
                     /lat_lon="23.30 N 121.00 E"
                     /collected_by="Maria Camargo and Charles Rabkins"
     protein         /gene="valS"
                     /locus_tag="E5P95_05405"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000807072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MKQEPTTYQP EEIEKKIYEI CSHRGYFEID GNEAIQEKNK RFCLMMPPPN VTGILHIGHA
       61 LTLSLQDILA RYKRMDGYKT LYQPGLDHAG IATQNVVEKQ LLNQGIKKED LGREAFVQKV
      121 WEWKEKSGGA ILEQMKRLGV SAAFSRTRFT MDKGLQRAVK LAFLKWYEKG LIIQDNYMVN
      181 WCTKDGALSD IEVEYEERKG ALYYIRYYLE NQKDYLVVAT TRPETLFGDS ALMVNPNDER
      241 YKHLVGQKVI LPLINRTIPI IADLHVEMEF GTGCVKVTPG HDFNDYEVGK RHHLEAIKIF
      301 DEKGILNAHC GEFENLERLE ARDKVVEKLK ENALLEKIEE HTHQVGHCYR CHNVVEPYVS
      361 KQWFVKPEIA QSSIKKIQQG LARFYPSNWI NNYNAWMREL RPWCISRQLF WGHQIPVFTC
      421 ENNHQFVSLD TPLNCPTCKS EKLEQDKDVL DTWFSSGLWA FSTLGWGQEK SDLFNENDLK
      481 DFYPNTTLIT GFDILFFWVA RMLFCSESLL GELPFKDIYL HALVRDEKGE KMSKSKGNVI
      541 DPLEMIEKYG ADSLRFTLAN LCATGRDIKL SVAHLENNKN FANKIFNAAS YLKLKQEAFK
      601 DRERLNEYQT PLGRYAKSRL NFVTKETRNA LDNYRFNDAT TLLYRFLWGE FCDWFIEFSK
      661 VENEAIDELG SVLKEALKLL HPFMPFISES LYHKLSNTDL ENTESIMVMP YPKDLTQDEP
      721 LEHEFEVIKD CIVSLRRLKI MLETPPIVLK EASVGLRETI ENTERLQTYA QKLARLEKVS
      781 VISSKPLKSV SDVGEFCQTH ANLENLDLSP LVARLKKQLE KLEKEKLKLN LHNENFVKNA
      841 PKSVLEKAQE SLKTLLEKES KIKQELDLLE QP
//