LOCUS       BDN80902.1              1316 aa    PRT              BCT 09-FEB-2023
DEFINITION  Mycobacterium pseudoshottsii DNA-directed RNA polymerase
            subunit beta' protein.
ACCESSION   AP026367-1117
PROTEIN_ID  BDN80902.1
SOURCE      Mycobacterium pseudoshottsii
  ORGANISM  Mycobacterium pseudoshottsii
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium
            ulcerans group.
REFERENCE   1  (bases 1 to 6051062)
  AUTHORS   Komine,T., Fukano,H. and Wada,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JUN-2022)
            Contact:Takeshi Komine
            Nippon Veterinary and Life Science University, School of
            Veterinary Medicine; Kyohnan-cho 1-7-1, Musashino, Tokyo 180-8602,
            Japan
REFERENCE   2  
  AUTHORS   Komine,T., Fukano,H., Yoshida,M., Inohana,M., Hoshino,Y.,
            Kurata,O. and Wada,S.
  TITLE     Complete Genome and Partial Megaplasmid Sequences of Mycobacterium
            pseudoshottsii Strain NJB1907-Z4, Isolated from an Aquarium-Reared
            Japanese Sardine (Sardinops melanostictus) in Japan
  JOURNAL   Microbiol Resour Announc 11 (12), e00785-22 (2022)
  REMARK    Publication Status: Online-Only
            DOI:10.1128/mra.00785-22
COMMENT     Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Flye v. 2.9; galaxy v. 0
            Genome Coverage       :: 189x
            Sequencing Technology :: Pacbio sequel; Illumina HiSeqX
            ##Genome-Assembly-Data-END##
FEATURES             Qualifiers
     source          /collection_date="2019-07-10"
                     /db_xref="taxon:265949"
                     /geo_loc_name="Japan:Tokyo"
                     /host="Sardinops melanostictus"
                     /isolation_source="liver of Japanese sardine"
                     /mol_type="genomic DNA"
                     /organism="Mycobacterium pseudoshottsii"
                     /strain="NJB1907-Z4"
     protein         /gene="rpoC"
                     /inference="COORDINATES:ab initio
                     prediction:MetaGeneAnnotator"
                     /inference="similar to AA sequence:UniProtKB:P0A675"
                     /locus_tag="NJB1907Z4_C11170"
                     /transl_table=11
BEGIN
        1 MLDVNFFDEL RIGLATAEDI RQWSYGEVKK PETINYRTLK PEKDGLFCEK IFGPTRDWEC
       61 YCGKYKRVRF KGIICERCGV EVTRAKVRRE RMGHIELAAP VTHIWYFKGV PSRLGYLLDL
      121 APKDLEKIIY FAAYVITSVD NEMRHNELST FEAEMMVERK AVEDQRDADL EARAQKLEAD
      181 LAELEAEGAK ADARRKVRDS GEREMRQLRD RAQRELDRLE DIWSTFTKLA PKQLIVDENL
      241 YRELQDRYGE YFTGAMGAES IQKLIETFDI DAEAEILRDV IRNGKGQKKL RALKRLKVVA
      301 AFQQSGNSPM GMVLDAVPVI PPELRPMVQL DGGRFATSDL NDLYRRVINR NNRLKRLIDL
      361 GAPEIIVNNE KRMLQESVDA LFDNGRRGRP VTGPGNRPLK SLSDLLKGKQ GRFRQNLLGK
      421 RVDYSGRSVI VVGPQLKLHQ CGLPKLMALE LFKPFVMKRL VDLNHAQNIK SAKRMVERQR
      481 PQVWDVLEEV IAEHPVLLNR APTLHRLGIQ AFEPMLVEGK AIQLHPLVCE AFNADFDGDQ
      541 MAVHLPLSAE AQAEARILML SSNNILSPAS GRPLAMPRLD MVTGLYYLTT EVEGDKGAYQ
      601 PAGQDSPETG VYSSPAEAIM AADRGVLSVR AKIKVRLTQL RPPAEIEDAL FGHNGWQPGD
      661 AWTAETTLGR VLFNELLPLG YAFVNKQMHK KVQAAIINDL AERYPMIVVA QTVDKLKDSG
      721 FYWATRSGVT VSMADVLVPP RKKEILDSYE ERAEKVEKQF QRGALNYDER NEALVEIWKE
      781 ATDEVGQALR EHYPADNPII TIVDSGATGN FTQTRTLAGM KGLVTNPKGE FIPRPIKSSF
      841 REGLTVLEYF INTHGARKGL ADTALRTADS GYLTRRLVDV SQDVIVREHD CQTERGIMVE
      901 LAERQGDGTL IRDPYIETSA YARTLGADAV DEAGNVVVAR GEDLGDPEIE ACLAAGITQV
      961 KVRSVLTCTT GTGVCATCYG RSMATGKLVD IGEAVGIVAA QSIGEPGTQL TMRTFHQGGV
     1021 GEDITGGLPR VQELFEARVP RGKAPIADVT GRVRLEDGER FYKITIVPDD GGEEVVYDKL
     1081 SKRQRLRVFK HEDGSERVLS DGDHVEVGQQ LMEGSADPHE VLRVQGPREV QIHLVREVQE
     1141 VYRAQGVSIH DKHIEVIVRQ MLRRVTIIDS GATEFLPGSL IDRAEFEAEN RRVVAESGEP
     1201 AAGRPVLMGI TKASLATDSW LSAASFQETT RVLTDAAINC RSDKLNGLKE NVIIGKLIPA
     1261 GTGINRYRNI AVQPTEEARA AAYTIPSYED QYYSPDFGQA TGAAVPLDDY GYSDYR
//