LOCUS       BDD77539.1              1271 aa    PRT              VRL 25-DEC-2021
DEFINITION  Severe acute respiratory syndrome coronavirus 2 surface
            glycoprotein protein.
ACCESSION   BS001323-3
PROTEIN_ID  BDD77539.1
SOURCE      Severe acute respiratory syndrome coronavirus 2
  ORGANISM  Severe acute respiratory syndrome coronavirus 2
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
            Betacoronavirus; Sarbecovirus; Betacoronavirus pandemicum.
REFERENCE   1  (bases 1 to 29828)
  AUTHORS   
  CONSRTM   Japan COVID-19 Open Data Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (24-DEC-2021)
            Contact:Hiroshi Mori
            National Institute of Genetics; 1111 Yata, Mishima, Shizuoka
            411-8540, Japan
            URL    :https://www.ddbj.nig.ac.jp/sars-cov-2
REFERENCE   2  
  AUTHORS   Nagaoka,H., Arita,Y., Ishigami,K., Mori,H., Tanizawa,Y., Asano,S.,
            Fujisawa,T., Arita,M., Kurokawa,K., Mitsunaga,S., Toyoda,A. and
            Inoue,I.
  TITLE     Whole-genome sequencing test of SARS-CoV-2 variants from Shizuoka
            samples.
  JOURNAL   Unpublished
COMMENT     The genome was sequenced and analyzed under the collaboration
            between Shizuoka Institute of Environment and Hygiene, National
            Institute of Genetics, and Shizuoka Prefecture.
            
            ##Assembly-Data-START##
            Assembly Method       :: META_VRL_LONG v. 1.0.0
            Coverage              :: 3659x
            Sequencing Technology :: Nanopore GridION
            ##Assembly-Data-END##
FEATURES             Qualifiers
     source          /collection_date="2021-07-05"
                     /db_xref="taxon:2697049"
                     /geo_loc_name="Japan:Shizuoka, center"
                     /host="Homo sapiens, male"
                     /isolate="hCoV-19/Japan/SZ-NIG-Y21573/2021"
                     /isolation_source="saliva"
                     /mol_type="genomic RNA"
                     /organism="Severe acute respiratory syndrome coronavirus
                     2"
     protein         /gene="S"
                     /transl_table=1
BEGIN
        1 MFVFLVLLPL VSSQCVNLRT RTQLPPAYTN SFTRGVYYPD KVFRSSVLHS TQDLFLPFFS
       61 NVTWFHAIHV SGTNGTKRFD NPVLPFNDGV YFASTEKSNI IRGWIFGTTL DSKTQSLLIV
      121 NNATNVVIKV CEFQFCNDPF LDVYYHKNNK SWMESGVYSS ANNCTFEYVS QPFLMDLEGK
      181 QGNFKNLREF VFKNIDGYFK IYSKHTPINL VRDLPQGFSA LEPLVDLPIG INITRFQTLL
      241 ALHRSYLTPG DSSSGWTAGA AAYYVGYLQP RTFLLKYNEN GTITDAVDCA LDPLSETKCT
      301 LKSFTVEKGI YQTSNFRVQP TESIVRFPNI TNLCPFGEVF NATRFASVYA WNRKRISNCV
      361 ADYSVLYNSA SFSTFKCYGV SPTKLNDLCF TNVYADSFVI RGDEVRQIAP GQTGKIADYN
      421 YKLPDDFTGC VIAWNSNNLD SKVGGNYNYR YRLFRKSNLK PFERDISTEI YQAGSKPCNG
      481 VEGFNCYFPL QSYGFQPTNG VGYQPYRVVV LSFELLHAPA TVCGPKKSTN LVKNKCVNFN
      541 FNGLTGTGVL TESNKKFLPF QQFGRDIADT TDAVRDPQTL EILDITPCSF GGVSVITPGT
      601 NTSNQVAVLY HGVNCTEVPV AIHADQLTPT WRVYSTGSNV FQTRAGCLIG AEHVNNSYEC
      661 DIPIGAGICA SYQTQTNSRR RARSVASQSI IAYTMSLGAE NSVAYSNNSI AIPTNFTISV
      721 TTEILPVSMT KTSVDCTMYI CGDSTECSNL LLQYGSFCTQ LNRALTGIAV EQDKNTQEVF
      781 AQVKQIYKTP PIKDFGGFNF SQILPDPSKP SKRSFIEDLL FNKVTLADAG FIKQYGDCLG
      841 DIAARDLICA QKFNGLTVLP PLLTDEMIAQ YTSALLAGTI TSGWTFGAGA ALQIPFAMQM
      901 AYRFNGIGVT QNVLYENQKL IANQFNSAIG KIQDSLSSTA SALGKLQNVV NQNAQALNTL
      961 VKQLSSNFGA ISSVLNDILS RLDKVEAEVQ IDRLITGRLQ SLQTYVTQQL IRAAEIRASA
     1021 NLAATKMSEC VLGQSKRVDF CGKGYHLMSF PQSAPHGVVF LHVTYVPAQE KNFTTAPAIC
     1081 HDGKAHFPRE GVFVSNGTHW FVTQRNFYEP QIITTDNTFV SGNCDVVIGI VNNTVYDPLQ
     1141 PELDSFKEEL DKYFKNHTSP DVDLGDISGI NASVVNIQKE IDRLNEVAKN LNESLIDLQE
     1201 LGKYEQYIKW PWYIWLGFIA GLIAIVMVTI MLCCMTSCCS CLKGCCSCGS CCKFDEDDSE
     1261 PLLKGVKLHY T
//