LOCUS       BDB07753.1              1273 aa    PRT              VRL 07-SEP-2021
DEFINITION  Severe acute respiratory syndrome coronavirus 2 surface
            glycoprotein protein.
ACCESSION   BS001157-3
PROTEIN_ID  BDB07753.1
SOURCE      Severe acute respiratory syndrome coronavirus 2
  ORGANISM  Severe acute respiratory syndrome coronavirus 2
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
            Betacoronavirus; Sarbecovirus; Betacoronavirus pandemicum.
REFERENCE   1  (bases 1 to 29838)
  AUTHORS   
  CONSRTM   Japan COVID-19 Open Data Consortium
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2021)
            Contact:Hiroshi Mori
            National Institute of Genetics; 1111 Yata, Mishima, Shizuoka
            411-8540, Japan
            URL    :https://www.ddbj.nig.ac.jp/sars-cov-2
REFERENCE   2  
  AUTHORS   Nagaoka,H., Arita,Y., Ishigami,K., Mori,H., Tanizawa,Y., Asano,S.,
            Fujisawa,T., Arita,M., Kurokawa,K., Mitsunaga,S., Toyoda,A. and
            Inoue,I.
  TITLE     Whole-genome sequencing test of SARS-CoV-2 variants from Shizuoka
            samples.
  JOURNAL   Unpublished
COMMENT     The genome was sequenced and analyzed under the collaboration
            between Shizuoka Institute of Environment and Hygiene, National
            Institute of Genetics, and Shizuoka Prefecture.
            
            ##Assembly-Data-START##
            Assembly Method       :: META_VRL_LONG v. 1.0.0
            Coverage              :: 603x
            Sequencing Technology :: Nanopore GridION
            ##Assembly-Data-END##
FEATURES             Qualifiers
     source          /collection_date="2021-04-15"
                     /db_xref="taxon:2697049"
                     /geo_loc_name="Japan:Shizuoka, center"
                     /host="Homo sapiens, female"
                     /isolate="hCoV-19/Japan/SZ-NIG-Y21035/2021"
                     /isolation_source="oropharyngeal swab"
                     /mol_type="genomic RNA"
                     /organism="Severe acute respiratory syndrome coronavirus
                     2"
     protein         /gene="S"
                     /transl_table=1
BEGIN
        1 MFVFLVLLPL VSSQCVNLTT RTQLPPAYTN SFTRGVYYPD KVFRSSVLHS TQDLFLPFFS
       61 NVTWFHAIHV SGTNGTKRFD NPVLPFNDGV YFASTEKSNI IRGWIFGTTL DSKTQSLLIV
      121 NNATNVVIKV CEFQFCNDPF LGVYYHKNNK SWMESEFRVY SSANNCTFEY VSQPFLMDLE
      181 GKQGNFKNLR EFVFKNIDGY FKIYSKHTPI NLVRDLPQGF SALEPLVDLP IGINITRFQT
      241 LLALHRSYLT PGDSSSGWTA GAAAYYVGYL QPRTFLLKYN ENGTITDAVD CALDPLSETK
      301 CTLKSFTVEK GIYQTSNFRV QPTESIVRFP NITNLCPFGE VFNATRFASV YAWNRKRISN
      361 CVADYSVLYN SASFSTFKCY GVSPTKLNDL CFTNVYADSF VIRGDEVRQI APGQTGKIAD
      421 YNYKLPDDFT GCVIAWNSNN LDSKVGGNYN YLYRLFRKSN LKPFERDIST EIYQAGSTPC
      481 NGVEGFNCYF PLQSYGFQPT NGVGYQPYRV VVLSFELLHA PATVCGPKKS TNLVKNKCVN
      541 FNFNGLTGTG VLTESNKKFL PFQQFGRDIA DTTDAVRDPQ TLEILDITPC SFGGVSVITP
      601 GTNTSNQVAV LYQGVNCTEV PVAIHADQLT PTWRVYSTGS NVFQTRAGCL IGAEHVNNSY
      661 ECDIPIGAGI CASYHTQTNS PRRARSVASQ SIIAYTMSLG AENSVAYSNN SIAIPTNFTI
      721 SVTTEILPVS MTKTSVDCTM YICGDSTECS NLLLQYGSFC TQLNRALTGI AVEQDKNTQE
      781 VFAQVKQIYK TPPIKDFGGF NFSQILPDPS KPSKRSFIED LLFNKVTLAD AGFIKQYGDC
      841 LGDIAARDLI CAQKFNGLTV LPPLLTDEMI AQYTSALLAG TITSGWTFGA GAALQIPFAM
      901 QMAYRFNGIG VTQNVLYENQ KLIANQFNSA IGKIQDSLSS TASALGKLQD VVNQNAQALN
      961 TLVKQLSSNF GAISSVLNDI LSRLDKVEAE VQIDRLITGR LQSLQTYVTQ QLIRAAEIRA
     1021 SANLAATKMS ECVLGQSKRV DFCGKGYHLM SFPQSAPHGV VFLHVTYVPA QEKNFTTAPA
     1081 ICHDGKAHFP REGVFVSNGT HWFVTQRNFY EPQIITTDNT FVSGNCDVVI GIVNNTVYDP
     1141 LQPELDSFKE ELDKYFKNHT SPDVDLGDIS GINASVVNIQ KEIDRLNEVA KNLNESLIDL
     1201 QELGKYEQYI KWPWYIWLGF IAGLIAIVMV TIMLCCMTSC CSCLKGCCSC GSCCKFDEDD
     1261 SEPVLKGVKL HYT
//