LOCUS       BAD68132.1               410 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group putative diphosphonucleotide
            phosphatase 1 protein.
ACCESSION   AP003221-7
PROTEIN_ID  BAD68132.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 161970)
  AUTHORS   Sasaki,T., Matsumoto,T. and Yamamoto,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-FEB-2001)
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2  
  AUTHORS   Sasaki,T., Matsumoto,T., Yamamoto,K., Sakata,K., Baba,T.,
            Katayose,Y., Wu,J., Niimura,Y., Cheng,Z., Nagamura,Y.,
            Antonio,B.A., Kanamori,H., Hosokawa,S., Masukawa,M., Arikawa,K.,
            Chiden,Y., Hayashi,M., Okamoto,M., Ando,T., Aoki,H., Arita,K.,
            Hamada,M., Harada,C., Hijishita,S., Honda,M., Ichikawa,Y.,
            Idonuma,A., Iijima,M., Ikeda,M., Ikeno,M., Itoh,S., Itoh,T.,
            Itoh,Y., Itoh,Y., Iwabuchi,A., Kamiya,K., Karasawa,W.,
            Katagiri,S., Kikuta,A., Kobayashi,N., Kono,I., Machita,K.,
            Maehara,T., Mizuno,H., Mizubayashi,T., Mukai,Y., Nagasaki,H.,
            Nakashima,M., Nakama,Y., Nakamichi,Y., Nakamura,M., Namiki,N.,
            Negishi,M., Ohta,I., Ono,N., Saji,S., Sakai,K., Shibata,M.,
            Shimokawa,T., Shomura,A., Song,J., Takazaki,Y., Terasawa,K.,
            Tsuji,K., Waki,K., Yamagata,H., Yamane,H., Yoshiki,S.,
            Yoshihara,R., Yukawa,K., Zhong,H., Iwama,H., Endo,T., Ito,H.,
            Hahn,J.H., Kim,H.I., Eun,M.Y., Yano,M., Jiang,J. and Gojobori,T.
  TITLE     The genome sequence and structure of rice chromosome 1
  JOURNAL   Nature 420, 312-316 (2002)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from T7 to SP6 of the PAC
            clone. This sequence of P0003D09 clone has an overlap with
            P0691E06 (DDBJ: AP003293) clone at 5' end and an overlap with
            P0034E02 (DDBJ: AP003232) clone at 3' end.  Detailed information
            on overlap and assembly quality together with annotation of this
            entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="1"
                     /clone="P0003D09"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="P0003D09.8-2"
                     /note="contains EST(s):
                     AU056883(S20951),AU056108(S20293),AU056109(S20293),
                     AU056884(S20951)"
     intron_pos      37:1 (1/9)
     intron_pos      76:2 (2/9)
     intron_pos      121:0 (3/9)
     intron_pos      183:2 (4/9)
     intron_pos      246:0 (5/9)
     intron_pos      268:2 (6/9)
     intron_pos      300:0 (7/9)
     intron_pos      364:0 (8/9)
     intron_pos      391:0 (9/9)
BEGIN
        1 MRLTWVSGDA RPQQVQYGTG KTATSVATTF THKDMCSIAV LPSPAKDFGW HDPGYIHSAL
       61 MTGLQPSQSY NYRYGSDSVG WSNTTEFRTP PAAGSGELSF VIFGDMGKAP LDPSVEHYIQ
      121 PGSTSVAKAV AAEMQTGKVD SIFHIGDISY ATGFLVEWDF FLHLITPLAS QVSYMTAIGN
      181 HERDYAGSGS VYPTPDSGGE CGVPYESYFP MPASGRDKPW YSIEQGSVHF VVMSTEHEWS
      241 EKSDQYNWME MDLSSVDRSR TPWVIFIGHR PMYSSSSGIP PSVDPNFVSS VEPLLLNHKV
      301 DLVFFGHVHN YERTCAVYQG NCKGMPKKDA KGVDTYDNSN YAAPVHAVVG AGGFNLDGFP
      361 KIGLHSWSLS RISEFGYARV HATKTDMLVQ FVNSNTSAVQ DQFRIVKGAR
//