LOCUS BAD61694.1 564 aa PRT PLN 16-FEB-2008 DEFINITION Oryza sativa Japonica Group EDR1-like protein. ACCESSION AP003685-8 PROTEIN_ID BAD61694.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 138037) AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Direct Submission JOURNAL Submitted (23-MAY-2001) Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Oryza sativa nipponbare(GA3) genomic DNA, chromosome 6, PAC clone:P0548E04 JOURNAL Published Only in Database(2001) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from T7 to SP6 of the PAC clone. This sequence of P0548E04 clone has an overlap with P0535F09 (DDBJ: AP007231) clone at 5' end and with P0017G10 (DDBJ: AP004685) at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="6" /clone="P0548E04" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="P0548E04.7" /note="MAP kinase kinase kinase-like" /note="contains full-length cDNA(s): AK073747" intron_pos 64:2 (1/15) intron_pos 103:0 (2/15) intron_pos 131:2 (3/15) intron_pos 168:2 (4/15) intron_pos 187:0 (5/15) intron_pos 224:0 (6/15) intron_pos 243:0 (7/15) intron_pos 299:2 (8/15) intron_pos 335:2 (9/15) intron_pos 360:1 (10/15) intron_pos 419:0 (11/15) intron_pos 451:0 (12/15) intron_pos 478:0 (13/15) intron_pos 496:0 (14/15) intron_pos 541:0 (15/15) BEGIN 1 MDHGGQVSPV PATATAPRKV RREHMRLGVY HDVLQRLRDA GAPEALAPDF AEKLWTHFHR 61 FNASYAMDVN VERAEDVLMH MKLLEKAIHP ENQPAFSVRI VQVPLDIDAS EADSQSNITE 121 DDNCPTPRTP AEHPAPIFGS TTALKALVRQ ASSKNLLDDN QDIDAILRPM HEITFASDDK 181 PKGLTQLSSL LGNLNLDIKE VHALSTNDGY FLDIFIVIGW DHKETQLLEE ALEKEIHNYE 241 PQMPSKSSCW PPELAGKQSL INSQVNHVQI PKDNTDEWEI NFDVLDIQEK VASGTYGDLY 301 RGTYFGEDVA IKVLKSDRLN ENMQEEFNEE VFIMRKIRHK NIVRFLGACT KSPTLCIVTE 361 FMKNGSVYDY LHKRKGSFKL PSLLKAAVDI SKGMNYLHQN KIIHRDLKTA NLLMDEHELI 421 KVADFGVARV KAESGIMTAE TGTYRWMAPE VIEHKPYDSK ADVFSFGVVL WELLTGKIPH 481 EFLTPLQAAI GVVQEGLRPV IPKATDPKLA LLLESCWQQN AVNRPDFVQI LQKLDEIAGE 541 HGIDLTHPHK EKEKGGFFTF GKVH //