LOCUS       BAD25897.1               473 aa    PRT              PLN 16-FEB-2008
DEFINITION  Oryza sativa Japonica Group AP2 domain-containing transcription
            factor-like protein.
ACCESSION   AP005513-24
PROTEIN_ID  BAD25897.1
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 157627)
  AUTHORS   Sasaki,T., Matsumoto,T. and Katayose,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUL-2002)
            Contact:Takuji Sasaki
            National Institute of Agrobiological Sciences, Rice Genome
            Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan
            URL    :http://rgp.dna.affrc.go.jp/
REFERENCE   2  
  AUTHORS   Sasaki,T., Matsumoto,T. and Katayose,Y.
  TITLE     Oryza sativa nipponbare(GA3) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0014E22
  JOURNAL   Published Only in Database(2002)
COMMENT     Genes were predicted from the integrated results of the following:
            GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH
            (http://www.softberry.com/), GeneMark.hmm
            (http://opal.biology.gatech.edu/GeneMark/), GlimmerM
            (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM
            (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor
            (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4
            (http://globin.cse.psu.edu/html/docs/sim4.html), gap2
            (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The
            genomic sequence was searched against NCBI NonRedundant Protein
            database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA
            sequence database at RGP or DDBJ. Protein homologies of the coding
            regions were searched against NCBI NonRedundant Protein database
            with BLASTP. ESTs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no. and RGP clone ID.
            Full-length cDNAs represent the identified cDNA sequences using
            BLASTN with the corresponding DDBJ accession no.
            
            A gene with identity or significant homology to a protein is
            classified based on the protein name to indicate the homology
            level such as same name, 'putative-' and '-like protein'.  A gene
            without significant homology to any protein but with full-length
            cDNA or EST homology (covering almost the entire length of partial
            sequence) is classified as an 'unknown' protein. A gene predicted
            by two or more gene prediction programs is classified as a
            'hypothetical' protein according to IRGSP standard. A gene
            predicted by a single gene prediction program is also classified
            as a probable 'hypothetical' protein and is included as a
            miscellaneous feature of the sequence.
            
            The orientation of the sequence is from M13rev to -21M13 of the
            BAC clone. This sequence of OSJNBa0014E22 clone has an overlap
            with OJ1581_H09 (DDBJ: AP004067) clone at 5' end and with P0010C01
            (DDBJ: AP004768) at 3' end.  Detailed information on overlap and
            assembly quality together with annotation of this entry is
            available at http://rgp.dna.affrc.go.jp/GenomeSeq.html
FEATURES             Qualifiers
     source          /chromosome="2"
                     /clone="OSJNBa0014E22"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="genomic DNA"
                     /organism="Oryza sativa Japonica Group"
     protein         /gene="OSJNBa0014E22.30"
BEGIN
        1 MDAVDRGGGG GGGGARGHGR RWKGKGVSAA ISSSAAETQQ PVPVLEDAPA AAALLRPQKK
       61 IRSPDRRLQR SISSLSSAPA SPDSSSVSNP MSPPAMSLPN QPPSSRHIFP FAYDPSPGAA
      121 APRLLPLLQY SSLYPQPLLP QQQSPLQNQQ MISFGSSQQQ QQQQPQFGAA SPLFPPQFLP
      181 PEEQQRLLLR YWSEALNLSP PGVRGGALPP SLYQHLLRAP GPPKLYRGVR QRHWGKWVAE
      241 IRLPRNRTRL WLGTFDTAED AAMAYDREAF KLRGENARLN FPDLFLGKGR TGGSGRTSAS
      301 AAASCSSSSS SAPPTPDESH TQQAQPQPQQ PTEESSNTEP KPLLFVAEQD GIPEPELNPQ
      361 LQTAEQHGSD GNTAMFQPSV TSGGIWGPAD EAWFSAWGPG SSVWDYDMDS AHGLLLQSRL
      421 AGEQTGMDYA YTAPEVLVAP VPAAGTAMAT AASSSLPPRP PPPCHSPTFA WKD
//