LOCUS BAB64818.1 593 aa PRT PLN 15-FEB-2008 DEFINITION Oryza sativa Japonica Group kinase interacting protein 1 -like protein. ACCESSION AP003301-27 PROTEIN_ID BAB64818.1 SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 172161) AUTHORS Sasaki,T., Matsumoto,T. and Yamamoto,K. TITLE Direct Submission JOURNAL Submitted (19-FEB-2001) Contact:Takuji Sasaki National Institute of Agrobiological Sciences, Rice Genome Research Program; Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, Japan URL :http://rgp.dna.affrc.go.jp/ REFERENCE 2 AUTHORS Sasaki,T., Matsumoto,T., Yamamoto,K., Sakata,K., Baba,T., Katayose,Y., Wu,J., Niimura,Y., Cheng,Z., Nagamura,Y., Antonio,B.A., Kanamori,H., Hosokawa,S., Masukawa,M., Arikawa,K., Chiden,Y., Hayashi,M., Okamoto,M., Ando,T., Aoki,H., Arita,K., Hamada,M., Harada,C., Hijishita,S., Honda,M., Ichikawa,Y., Idonuma,A., Iijima,M., Ikeda,M., Ikeno,M., Itoh,S., Itoh,T., Itoh,Y., Itoh,Y., Iwabuchi,A., Kamiya,K., Karasawa,W., Katagiri,S., Kikuta,A., Kobayashi,N., Kono,I., Machita,K., Maehara,T., Mizuno,H., Mizubayashi,T., Mukai,Y., Nagasaki,H., Nakashima,M., Nakama,Y., Nakamichi,Y., Nakamura,M., Namiki,N., Negishi,M., Ohta,I., Ono,N., Saji,S., Sakai,K., Shibata,M., Shimokawa,T., Shomura,A., Song,J., Takazaki,Y., Terasawa,K., Tsuji,K., Waki,K., Yamagata,H., Yamane,H., Yoshiki,S., Yoshihara,R., Yukawa,K., Zhong,H., Iwama,H., Endo,T., Ito,H., Hahn,J.H., Kim,H.I., Eun,M.Y., Yano,M., Jiang,J. and Gojobori,T. TITLE The genome sequence and structure of rice chromosome 1 JOURNAL Nature 420, 312-316 (2002) COMMENT Genes were predicted from the integrated results of the following: GENSCAN (http://CCR-081.mit.edu/GENSCAN.html), FGENESH (http://www.softberry.com/), GeneMark.hmm (http://opal.biology.gatech.edu/GeneMark/), GlimmerM (http://www.tigr.org/tdb/glimmerm/glmr_form.html), RiceHMM (http://rgp.dna.affrc.go.jp/RiceHMM/), SplicePredictor (http://bioinformatics.iastate.edu/cgi-bin/sp.cgi), sim4 (http://globin.cse.psu.edu/html/docs/sim4.html), gap2 (http://www.tigr.org/software/glimmerm/), BLASTN and BLASTX. The genomic sequence was searched against NCBI NonRedundant Protein database, nr (ftp://ncbi.nlm.nih.gov/blast/db) and the cDNA sequence database at RGP or DDBJ. Protein homologies of the coding regions were searched against NCBI NonRedundant Protein database with BLASTP. ESTs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. and RGP clone ID. Full-length cDNAs represent the identified cDNA sequences using BLASTN with the corresponding DDBJ accession no. A gene with identity or significant homology to a protein is classified based on the protein name to indicate the homology level such as same name, 'putative-' and '-like protein'. A gene without significant homology to any protein but with full-length cDNA or EST homology (covering almost the entire length of partial sequence) is classified as an 'unknown' protein. A gene predicted by two or more gene prediction programs is classified as a 'hypothetical' protein according to IRGSP standard. A gene predicted by a single gene prediction program is also classified as a probable 'hypothetical' protein and is included as a miscellaneous feature of the sequence. The orientation of the sequence is from SP6 to T7 of the PAC clone. This sequence of P0701D05 clone has an overlap with B1189A09(DDBJ: AP003209) clone at 5' end and with OJ1276_B06(DDBJ: AP003339) clone at 3' end. Detailed information on overlap and assembly quality together with annotation of this entry is available at http://rgp.dna.affrc.go.jp/GenomeSeq.html FEATURES Qualifiers source /chromosome="1" /clone="P0701D05" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="genomic DNA" /organism="Oryza sativa Japonica Group" protein /gene="P0701D05.42" /note="contains full-length cDNA(s): AK064373,AK121992" intron_pos 35:1 (1/1) BEGIN 1 MKRMQRMPTR KSHSWWWDSH ISPKNSKWLA ENLEEMDKQV KDMLKLIEDE GDSFAKKAEM 61 YFERRPLLVT HVENFYRMYR ALAERYDNVT GELRKNIPSS LQSQGSLSIS ESDSETQSAP 121 PTPKPDSEET TPKQKRKPRA AGFDVFLGSG GSSDISKKGS DGSSSSSSES DSEVDELRED 181 NGDGSPFALN ERIAELEDEL QEAREKLEAL EEKNTRCQCE KLEEKLKDSH SEISSLQKEL 241 EGQLAHHDHE IEKCKKELEH VHEKYSHDKS TLETEIIKLQ DIVKNFEGDL AKMSQEKLQL 301 KAQVKELEQA SRSLDDSSAQ IMKLQEIIKD LQRRLDNDSN EKKMLEERAI EFEQVRKELE 361 GSRTEVAELQ ATINNLKADL GRALEEKSQL ESRINDLEHT IACNLEEFSQ EKSSLGAEIQ 421 KLKEANASLE GKLTSTESQL QQLHAEKSEA SISSEKQISD LNQAIADLET KLELLSSEKT 481 TVDNKVASLL TDVTARDEKI REMDSHLHQL HLEHVKLIAE ADAVTKAVSE LRARVSELEE 541 EVEEQKLMVS DGAEGKREAI RQLCFSLEHY RHGYQQLRQL LQGHHKRPLV MAN //