LOCUS AMU95103.1 588 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 diguanylate cyclase protein. ACCESSION CP013342-2132 PROTEIN_ID AMU95103.1 SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098 ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098 Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 3979087) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC 111660), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284143 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3979087) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 2.8 Genome Coverage :: 110x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:33:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 3,797 CDS :: 3,699 Pseudo Genes :: 49 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098" /mol_type="genomic DNA" /strain="203-1" /sub_species="terrae" /culture_collection="NBRC:15098" /type_material="type strain of Sphingomonas terrae" /db_xref="taxon:1219058" /geo_loc_name="Japan: Kyoto" /collection_date="1974" protein /locus_tag="AOA14_10850" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_003050872.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MIGAEENRGR RRASWTLVLL WLAAALWAVP AAATPLHINA PLCHSVGPLA APDDPLSALR 61 FSCSGEPTGY RDGSLWLRAD VGNRSEDRNG AALMVHFSRF DRVAVGFTYA DGQTRWQTVR 121 RGDYGAHWRV GGQILFEAPA RGAPLTAVTM RFDRLADHSL LRARLIPKEN ASLQAAGMAA 181 LVGASLTLLL VSGIYSLSLA VAVRRQYLLW QAAWSGVMIV WGAFWSQIHL VIFPAMAGTV 241 SAQASTLLAC LAIGVATASA VTAIDARHLP RALRRGTLAL GLAIAIAGVP LALIRTGNLQ 301 MLGNLLGIAV LVDLVAVALC IGWSWRKGSV EARDFALAWC LPMATLAIIH LVDVEDGFWG 361 GGSKLAVLVA ATWQALWLSA ASTRRLAHLR IERDDALAAE AQANELARRD PLTGLLNRRG 421 FVDAVTPLLD QAREGALPAA LLLVDVDRFK SINDIYGHEA GDAVLCRIAE RIARWEGTMC 481 SVARLGGEEF GLLTIGMEGI MLDRFAESIR REIALCDHSD TMGDRPVTAS VGVAEVRPAP 541 DFQYLYRIAD EALYDAKRAG RNRINVQRVP PRGDGEPGAD DRGVAYPA //