LOCUS AMU93284.1 728 aa PRT BCT 21-JUN-2016 DEFINITION Sphingopyxis terrae subsp. terrae NBRC 15098 diguanylate cyclase protein. ACCESSION CP013342-296 PROTEIN_ID AMU93284.1 SOURCE Sphingopyxis terrae subsp. terrae NBRC 15098 ORGANISM Sphingopyxis terrae subsp. terrae NBRC 15098 Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis. REFERENCE 1 (bases 1 to 3979087) AUTHORS Ohtsubo,Y., Nonoyama,S., Nagata,Y., Numata,M., Tsuchikane,K., Hosoyama,A., Yamazoe,A., Tsuda,M., Fujita,N. and Kawai,F. TITLE Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC 111660), a Polyethylene Glycol Degrader JOURNAL Genome Announc 4 (3) (2016) PUBMED 27284143 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3979087) AUTHORS Yoshiyuki,O. TITLE Direct Submission JOURNAL Submitted (30-NOV-2015) Department of Life Sciences, Tohoku University, Katahira 2-1-1, Sendai 980-8577, Japan COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Annotation was conducted using PGAP and MiGAP, and PGAP annotation was curated by referencing to the MiGAP annotation with the aid of annotation support tool of GenomeMatcher software. ##Genome-Assembly-Data-START## Assembly Method :: newbler v. 2.8 Genome Coverage :: 110x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 11/30/2015 14:33:14 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes :: 3,797 CDS :: 3,699 Pseudo Genes :: 49 rRNAs :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs :: 1, 1, 1 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Sphingopyxis terrae subsp. terrae NBRC 15098" /mol_type="genomic DNA" /strain="203-1" /sub_species="terrae" /culture_collection="NBRC:15098" /type_material="type strain of Sphingomonas terrae" /db_xref="taxon:1219058" /geo_loc_name="Japan: Kyoto" /collection_date="1974" protein /locus_tag="AOA14_01550" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_014074711.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MRCPERSADE VGRLAALAEY GIDPALGLPG LQPIVEMAAR TFDCPAAAVN MIGDDHVFFA 61 ASEGVGACDM SRDASFCAHA INAQDILVVE DATLDPRFHD NPLVAEGLIR FYAGAALRSP 121 SGHALGALCV LDPAPRAGLS PEDRARLRAL ADLVSDKLEL RRLGVQAATR PNRFAASAST 181 SPNAVICFDA GARVTAWNAA ASMMFGHDAA AMIGEPIDSI IDPRDHPLVH AAIARVRGGG 241 TPVTEATPLT GVRADGTRFP GEIHWSHWFE NGAIHFGTIV RDMTEAQAEH DALYRLANYD 301 ALTGLPNRNL LRARLAEAAV AGAPHALLVA DLAGFGDVNN ALGQAAGDAV LGEIGTRLGT 361 LVKESDMAAR CGGAAFALLV AADALLAVDA LAEAMIAAIA APIHIDGVEH HLSGHVGIAL 421 APDHGGEADA LIGSAELALF QARQLGPGSR YVYVPALRAQ AVARRMYDAE LHRAFEAGEF 481 CLFYQPQFCL ADGALTGAEA LIRWKHPERG LLEPAAFLAA LEAGPLAAPV ARWVVEEASV 541 CAAFWRARAP DFRMGINLSA SLFRAGDLPQ LVRGVCARRG LAPSALELEI TENILIEGEA 601 PIVEQLGALR DQGVHLAFDD FGTGFASLNL LRTLPVTHIK IDKSFTRMVR SAPRERIIVT 661 TLIDMARRLG ISVIAEGVET AEDAAFLREQ GCEEGQGYWF GPPVPPALFE ELYFANAGTL 721 REIGGSAG //