LOCUS AEG54614.1 997 aa PRT BCT 08-JUN-2015 DEFINITION Sinorhizobium meliloti AK83 sarcosine oxidase, alpha subunit family protein. ACCESSION CP002781-2839 PROTEIN_ID AEG54614.1 SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83) ORGANISM Sinorhizobium meliloti AK83 Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium. REFERENCE 1 (bases 1 to 3820344) AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A. TITLE Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti JOURNAL Genome Biol Evol 5 (3), 542-558 (2013) PUBMED 23431003 REFERENCE 2 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4086303 Source DNA and organism available from Emanuele G. Biondi (emanuele.biondi@unifi.it) Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sinorhizobium meliloti AK83 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Host, Plant root, Root nodule, Soil num_replicons :: 5 ref_biomaterial :: Missing biotic_relationship :: Symbiotic trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05780 Current Finishing Status :: Finished Funding Program :: DOE-CSP 2009 Source of Isolate :: Biondi, Emanuele (Universita di Firenze) Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C Gram Staining :: Gram- Symbiotic Relationship :: Mutualistic Diseases :: None Phenotypes :: Nitrogen cycle, Streptomycin resistant, Symbiotic ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Sinorhizobium meliloti AK83" /mol_type="genomic DNA" /strain="AK83" /db_xref="taxon:693982" /chromosome="1" /collected_by="Emmanuele Biondi" protein /locus_tag="Sinme_2907" /inference="protein motif:TFAM:TIGR01372" /note="KEGG: smd:Smed_2750 sarcosine oxidase alpha subunit family protein; TIGRFAM: Sarcosine oxidase, alpha subunit, heterotetrameric; PFAM: Glycine cleavage T-protein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; Glycine cleavage T-protein, C-terminal barrel" /transl_table=11 /db_xref="GO:0008115" /db_xref="InterPro:IPR001327" /db_xref="InterPro:IPR003953" /db_xref="InterPro:IPR006222" /db_xref="InterPro:IPR006277" /db_xref="InterPro:IPR013977" BEGIN 1 MTGVNRISGA GRLTPARTAR FTFDGRTLTA LEGDTIASAL IANDIHLVGR SFKYHRPRGI 61 LSAGAEEPNA LLDVSRDAAR RQPNVRATVQ EVFDGMKVLS QNRWPSLAFD VGGFNDLLSP 121 FFAAGFYYKT FMWPKAAWHK LYEPFIRRAA GLGVAPAEPD PDHYSSRYVH CDVLVVGAGA 181 AGLSAALAAA NAGAKVILCD EQPAVGGALH YDSGTMIDGK PGYDWALATG RALVAMDNVT 241 LLTRTTAFGY YNHNFVGLVE RVTDHLPAPD KGLPRERLWQ VRAKKVILAN GAIERHMVFA 301 NNDRPGIMLA SAGRTYLNHF GVAVGKKVGI YTAHDSAYEA AFDLRKAGID VPVIVDCRDK 361 PGDMVLAEAR SLGIEVLSGH SVVNTAGKLR IASMSVARNG GGASRKIAVD ALLVSAGWTP 421 SVHLFSQSRG KVTFDAATER FLPGTYAQEC LSVGACNGTD DLQATIDEAL AAGELAARAA 481 GAEGGAQVAL SGRNAFEWTG GMIGAAEGAG ADKTVKAFID FQHDVCAKDI RLAVREGMHS 541 IEHIKRFTTN GMASDQGKLS NMHGLAIAAE ALGKEIPQVG LTTFRQPYTP VTFGTIVSHS 601 RGSLFDPARK TPIHAWEEAH GAEFEDVGNW KRAWFYPKAG ENMHEAVARE CKTVREAAGV 661 FDASTLGKIE VVGPDAAEFL NLMYTNAWDN LKPGRCRYGI MLRDDGFVYD DGVVGRLAED 721 RFHVTTTTGG APRVLHHMED YLQTEFPHLK VWLTSTTEQW AVIAVQGPKA REIIAPLVEG 781 IDLSNEAFPH MSVAEGRICG VPTRLFRMSF TGELGFEVNV PADYGQAVWE AIWARAEPMG 841 ACAYGTETMH VLRAEKGYII VGQDTDGTLT PDDAGLSWAV SKKKQDFVGI RGMKRPDLVK 901 EGRKQLVGLL TKDPQVVLEE GAQIVADPNE PKPMTMLGHV TSSYWSPNCG RSIALAVVAG 961 GRARLGQTLY VPMADRTIAV EVSDMVFFDK EGGRLHG //