LOCUS AEG54601.1 802 aa PRT BCT 08-JUN-2015 DEFINITION Sinorhizobium meliloti AK83 protein of unknown function DUF404 protein. ACCESSION CP002781-2826 PROTEIN_ID AEG54601.1 SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83) ORGANISM Sinorhizobium meliloti AK83 Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium. REFERENCE 1 (bases 1 to 3820344) AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A. TITLE Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti JOURNAL Genome Biol Evol 5 (3), 542-558 (2013) PUBMED 23431003 REFERENCE 2 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4086303 Source DNA and organism available from Emanuele G. Biondi (emanuele.biondi@unifi.it) Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sinorhizobium meliloti AK83 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Host, Plant root, Root nodule, Soil num_replicons :: 5 ref_biomaterial :: Missing biotic_relationship :: Symbiotic trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05780 Current Finishing Status :: Finished Funding Program :: DOE-CSP 2009 Source of Isolate :: Biondi, Emanuele (Universita di Firenze) Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C Gram Staining :: Gram- Symbiotic Relationship :: Mutualistic Diseases :: None Phenotypes :: Nitrogen cycle, Streptomycin resistant, Symbiotic ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Sinorhizobium meliloti AK83" /mol_type="genomic DNA" /strain="AK83" /db_xref="taxon:693982" /chromosome="1" /collected_by="Emmanuele Biondi" protein /locus_tag="Sinme_2894" /inference="protein motif:PFAM:PF04169" /note="PFAM: Domain of unknown function DUF404; Domain of unknown function DUF403; Domain of unknown function DUF407; KEGG: smd:Smed_2736 hypothetical protein" /transl_table=11 /db_xref="InterPro:IPR007296" /db_xref="InterPro:IPR007297" /db_xref="InterPro:IPR007302" BEGIN 1 MAKKQAAGPE QMSRIEGGPA FGYRALPGVA DEMLDARGNV RPVWQRLLAT LGRMDETDLA 61 NRFARADRYL RDAGVFYRAY GKENSERSWP LSHIPVLIDE AEWATVSAGL VQRAELLERV 121 LADVYGKNRL VKAGLLPPAL IASNPEFLRP IVGLEPANGH FLHFCSFEIG RGPDGNWWVL 181 SDRTEAPSGA GFALENRVAT TRAFSDLYAE SHVHRLAGFF GAFRDTLQGH KQHADDRIAV 241 LSPGIANETY FEHAYIARYL GFMLLEGEDL TVVDGRVMVR TVAGLKPVGV LWRRLDASFA 301 DPLELNQSSH IGTPGIVEAL RAGSVSIVNA LGSGILETRA FLAFLPAICR YILGEEQKLP 361 SIATWWCGQE AERRHVAGNI ERMVIGPAYS TRPFFDDEGQ SVLGASFRES AGTSIGEWLA 421 ADGGKLVGQE VVTLSTTPAW VHGRLTPRPM SLRVFAARTR DGWQIMPGGF ARIGSGDDVA 481 AIAMQAGGTA ADVWIVSAKP VDRTTLLPAE ESFTRNLPGS LPSRAADNLF WLGRYIERAE 541 GALRVLRAWH GRFAESADPN MPLLKDVSDY LAVLGISTGE PVPDSLLSSI DSALFSAGNI 601 RDRFSPDGWL ALNDLSRTAR KFHATVQAGD DATHAMTILL RKLAGFAGLV HENMYRFTGW 661 RFLSIGRYLE RGLHMTGLLG HMSGPEAPDG AYDMLLEIGD SVMTHRRRYN VNTAAPTVTD 721 LLALDPLNPR SVLYQLNEIK KEVELLPNAF VNGQMSPFYR ETMRLHSGLA IMTPEQMDRA 781 VYRRLMQDLE HLSELLAQTC LG //