LOCUS AEG54505.1 865 aa PRT BCT 08-JUN-2015 DEFINITION Sinorhizobium meliloti AK83 DNA polymerase LigD, polymerase domain protein protein. ACCESSION CP002781-2730 PROTEIN_ID AEG54505.1 SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83) ORGANISM Sinorhizobium meliloti AK83 Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium. REFERENCE 1 (bases 1 to 3820344) AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A. TITLE Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti JOURNAL Genome Biol Evol 5 (3), 542-558 (2013) PUBMED 23431003 REFERENCE 2 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4086303 Source DNA and organism available from Emanuele G. Biondi (emanuele.biondi@unifi.it) Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sinorhizobium meliloti AK83 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Host, Plant root, Root nodule, Soil num_replicons :: 5 ref_biomaterial :: Missing biotic_relationship :: Symbiotic trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05780 Current Finishing Status :: Finished Funding Program :: DOE-CSP 2009 Source of Isolate :: Biondi, Emanuele (Universita di Firenze) Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C Gram Staining :: Gram- Symbiotic Relationship :: Mutualistic Diseases :: None Phenotypes :: Nitrogen cycle, Streptomycin resistant, Symbiotic ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Sinorhizobium meliloti AK83" /mol_type="genomic DNA" /strain="AK83" /db_xref="taxon:693982" /chromosome="1" /collected_by="Emmanuele Biondi" protein /locus_tag="Sinme_2798" /inference="protein motif:TFAM:TIGR02778" /note="KEGG: smd:Smed_2631 DNA ligase D; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D; DNA polymerase LigD, ligase domain; DNA ligase D, 3'-phosphoesterase domain; PFAM: DNA ligase, ATP-dependent, central; DNA ligase, ATP-dependent, C-terminal; DNA primase, small subunit" /transl_table=11 /db_xref="InterPro:IPR002755" /db_xref="InterPro:IPR012309" /db_xref="InterPro:IPR012310" /db_xref="InterPro:IPR014143" /db_xref="InterPro:IPR014144" /db_xref="InterPro:IPR014145" /db_xref="InterPro:IPR014146" BEGIN 1 MAARNEPLSE YNRRRDFTRT SEPKGAVARR SGDNRMRFLV QKHAATRLHY DFRLEWEGVL 61 KSWAVTRGPS LNPEDKRLAV RTEDHPLAYG DFEGTIPKGE YGGGTVMLWD TGWWEPEDDP 121 SKALKKGKLS FKLHGSRMKG GWALVRMRPP EGEKRENWLL VKETDDVASD DGESLINENI 181 TSIVTGRTME EIAEGRGEKR ARVWHSNKSI SANLKAGAIA ENGNAGKRAT RKASGKLPAF 241 KAPQLATLVT KVPAGDAWLN EAKFDGYRLV CAVGAGTVRC YTRNGLDWTE KFPAIAAALA 301 ELDCQSALID GEVVALSEGG STFSALQKAL RTGASTRLYA FDLIELDGKD LSRKPLVERK 361 ERLEALLQTL GATSTVQFSE HVRGNGEHVL SAICKAGQEG IIAKEADAPY RSGRSRSWLK 421 VKCTKRQEFV IGGYTPSSKK GRAFASLLVG TFEGGKLIYR GGVGTGFSGK TMEDLAAAFA 481 KRKRDTSPFD SVPRERMRNS VWLEPDLVAE VDFAEFTADG HVRHGSFEGL REDKEARAVK 541 LETPKPAEAE PETAKSKSSA RTRKTPPVQG DADVLGIRIS HPDRVLFEGQ GITKIDLARY 601 YAVVAERMLP FAADHPVSLV RCPQGGERHC FFQKHASDGF PEAIREVPIT ESSGDTENYM 661 YIHDAKGLVA AVQMGTLEFH IWGSSIDRLE KPDRLVFDLD PDPSVDFETV KAAALRLRDE 721 LAEIGLKTVP MVTGGKGVHV IVPLRPHAEW EEAKGFAKAL ARSIAERDPD NFVATMSKAK 781 RKGKIFIDWL RNDRGATAIA PYSTRARSGG PVATPVGWDE LQGLEAANGF QIPDIIERIE 841 AGTDPWREIG KISQSLTKKI LNSVE //