LOCUS AEG52428.1 772 aa PRT BCT 08-JUN-2015 DEFINITION Sinorhizobium meliloti AK83 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) protein. ACCESSION CP002781-653 PROTEIN_ID AEG52428.1 SOURCE Sinorhizobium meliloti AK83 (Ensifer meliloti AK83) ORGANISM Sinorhizobium meliloti AK83 Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium. REFERENCE 1 (bases 1 to 3820344) AUTHORS Galardini,M., Pini,F., Bazzicalupo,M., Biondi,E.G. and Mengoni,A. TITLE Replicon-dependent bacterial genome evolution: the case of Sinorhizobium meliloti JOURNAL Genome Biol Evol 5 (3), 542-558 (2013) PUBMED 23431003 REFERENCE 2 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Complete sequence of chromosome1 of Sinorhizobium meliloti AK83 JOURNAL Unpublished REFERENCE 3 (bases 1 to 3820344) AUTHORS Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Goodwin,L., Pitluck,S., Teshima,H., Detter,J.C., Han,C., Tapia,R., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Ovchinnikova,G., Pagani,I., Brilli,M., Bazzicalupo,M., Mengoni,A., Biondi,E.G. and Woyke,T. CONSRTM US DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (16-MAY-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA COMMENT URL -- http://www.jgi.doe.gov JGI Project ID: 4086303 Source DNA and organism available from Emanuele G. Biondi (emanuele.biondi@unifi.it) Contacts: Emanuele G. Biondi (emanuele.biondi@unifi.it) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Sinorhizobium meliloti AK83 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Missing environment :: Host, Plant root, Root nodule, Soil num_replicons :: 5 ref_biomaterial :: Missing biotic_relationship :: Symbiotic trophic_level :: Missing rel_to_oxygen :: Aerobe isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05780 Current Finishing Status :: Finished Funding Program :: DOE-CSP 2009 Source of Isolate :: Biondi, Emanuele (Universita di Firenze) Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 25 - 30C Gram Staining :: Gram- Symbiotic Relationship :: Mutualistic Diseases :: None Phenotypes :: Nitrogen cycle, Streptomycin resistant, Symbiotic ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## FEATURES Qualifiers source /organism="Sinorhizobium meliloti AK83" /mol_type="genomic DNA" /strain="AK83" /db_xref="taxon:693982" /chromosome="1" /collected_by="Emmanuele Biondi" protein /locus_tag="Sinme_0669" /inference="protein motif:TFAM:TIGR00254" /note="TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold-4; GAF; KEGG: smd:Smed_0574 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; GAF" /transl_table=11 /db_xref="GO:0004871" /db_xref="InterPro:IPR000014" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR003018" /db_xref="InterPro:IPR013656" BEGIN 1 MARKTSRSIR YADLNADDNA ETRRLIDAGS RLAEEVARLF PPEPDMADRH YWLEAMINHV 61 PDYIYAKDTA GRFLIANEVT VADNGLESLR DLVGKTDFDL HPHEFAQAVA DTERRVLETG 121 EPIFGIEERA IVTKDRDRWL MTSKVPLRSK SGRIIGIVGI SRDISDRKAA ERLLEGQARL 181 LEMIANGKPL GEFFHELVLL IEALLPGIKG SILLLSEDGR HLLHGAAPSL DAGFCAAIHG 241 LEIGPAAGSC GTAAWCGEQV IVSDVFADPL WEEYAPLLRP SGLRSCWSTP ILSRERKVLG 301 TFALYAQEVG TPSEQQQELI AMAAHLAGIA IERKRAEDRI GFMAHHDALT GLPNRVLFEE 361 QVAGMLEEIR ERDQWAVLAF LDLDDFKLIN DSLGHATGDE LLKIVAGRMR AAVRRSDSVV 421 RVGGDEFIIL LNGLPKERDV VLSRLEDIRT AIAMPVQLQG RSLQVSCSMG VACFPNQGKT 481 AGELLANADM AMYRAKELGR NNIQVFTEEM AARAHEKLQS QEELREALAR EEFLLHFQPQ 541 MSLETGRIFA AEALLRWQHP VRGIISPAAF IPLAEETGLI VPIGDWILRT ACRQLKAWQD 601 AGLPPLIVSV NVSARQFRER NWAARVAAVL EETCLEARYL ELELTESLIM QDVPGAIATM 661 HALEAIGVHL AIDDFGTGYS SLSALKRFPV RRLKIDRSFV TDIPHDADDM AITSAIISLA 721 QKLGLRVIAE GVETEAQVEF LQKSGCDEIQ GYFFSQPLPG EDFEVLLSSE RR //