LOCUS AEE85067.1 350 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana arginine/serine-rich splicing factor 35 protein. ACCESSION CP002687-4580 PROTEIN_ID AEE85067.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="RS40" /locus_tag="AT4G25500" /gene_synonym="ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35" /gene_synonym="ARGININE/SERINE-RICH SPLICING FACTOR" /gene_synonym="arginine/serine-rich splicing factor 35" /gene_synonym="arginine/serine-rich splicing factor 40" /gene_synonym="At-RS40" /gene_synonym="AT-SRP40" /gene_synonym="ATRSP35" /gene_synonym="ATRSP40" /gene_synonym="RSP35" /gene_synonym="SPLICING FACTOR AT-SRP40" /gene_synonym="T30C3.9" /inference="Similar to RNA sequence, EST:INSD:DR380094.1,INSD:EH957481.1,INSD:EH851458.1, INSD:BP657629.1,INSD:EL219826.1,INSD:BP641618.1, INSD:EG527328.1,INSD:EG521018.1,INSD:BP830659.1, INSD:AV825012.1,INSD:DR336625.1,INSD:DR353085.1, INSD:ES181907.1,INSD:BP635287.1,INSD:DR353087.1, INSD:EL153456.1,INSD:BP638496.1,INSD:AV821437.1, INSD:DR336621.1,INSD:ES124391.1,INSD:BP807399.1, INSD:BP633340.1,INSD:BP624537.1,INSD:AA713267.1, INSD:DR296172.1,INSD:BP806436.1,INSD:DR336622.1, INSD:EG521017.1,INSD:DR374217.1,INSD:DR336620.1, INSD:EG527179.1,INSD:BP659748.1,INSD:DR296170.1, INSD:BP837999.1,INSD:BP623631.1,INSD:DR336623.1, INSD:EL091390.1,INSD:DR336624.1,INSD:DR336619.1, INSD:DR363791.1,INSD:AI992725.1,INSD:EL098212.1, INSD:EL085958.1,INSD:BP824979.1,INSD:T45156.1, INSD:EH857014.1,INSD:ES023930.1,INSD:BP820322.1, INSD:DR353086.1,INSD:DR353084.1,INSD:H37668.1, INSD:ES012094.1,INSD:AV781885.1,INSD:BP668110.1, INSD:BP644466.1" /inference="Similar to RNA sequence, mRNA:INSD:AY046008.2,INSD:X99437.1,INSD:U76607.1" /note="arginine/serine-rich splicing factor 35 (RSP35); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G52040.2); Has 15818 Blast hits to 12132 proteins in 578 species: Archae - 10; Bacteria - 734; Metazoa - 9656; Fungi - 1783; Plants - 2169; Viruses - 46; Other Eukaryotes - 1420 (source: NCBI BLink)." /db_xref="TAIR:AT4G25500" /db_xref="Araport:AT4G25500" intron_pos 36:1 (1/4) intron_pos 74:0 (2/4) intron_pos 154:2 (3/4) intron_pos 340:2 (4/4) BEGIN 1 MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF 61 GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF VINFDADNTR TRDLEKHFEP 121 YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DARGNGHSPE 181 RRRDRSPERR RRSPSPYKRE RGSPDYGRGA SPVAAYRKER TSPDYGRRRS PSPYKKSRRG 241 SPEYGRDRRG NDSPRRRERV ASPTKYSRSP NNKRERMSPN HSPFKKESPR NGVGEVESPI 301 ERRERSRSSP ENGQVESPGS IGRRDSDGGY DGAESPMQKS RSPRSPPADE //