LOCUS AEE84333.1 257 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana small nuclear ribonucleoprotein associated protein B protein. ACCESSION CP002687-3585 PROTEIN_ID AEE84333.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="smB" /locus_tag="AT4G20440" /gene_synonym="F9F13.90" /gene_synonym="F9F13_90" /gene_synonym="small nuclear ribonucleoprotein associated protein B" /inference="Similar to RNA sequence, EST:INSD:EL125210.1,INSD:ES110749.1,INSD:ES195381.1, INSD:ES159715.1,INSD:DR297981.1,INSD:DR297974.1, INSD:BP838755.2,INSD:DR297978.1,INSD:EG528805.1, INSD:AU236760.2,INSD:DR297962.1,INSD:ES029720.1, INSD:EL336214.1,INSD:ES142441.1,INSD:ES198251.1, INSD:DR297956.1,INSD:DR297990.1,INSD:DR297961.1, INSD:DR208231.1,INSD:ES111214.1,INSD:EG471519.1, INSD:EL130910.1,INSD:BP815970.1,INSD:BP825218.1, INSD:EL167142.1,INSD:ES009531.1,INSD:EH818383.1, INSD:DR208230.1,INSD:ES104990.1,INSD:DR297971.1, INSD:DR297952.1,INSD:DR297985.1,INSD:DR208233.1, INSD:BP641848.1,INSD:DR297982.1,INSD:ES070562.1, INSD:DR297988.1,INSD:DR297984.1,INSD:DR297969.1, INSD:ES215865.1,INSD:DR297964.1,INSD:ES158977.1, INSD:DR297976.1,INSD:AV539018.1,INSD:DR297951.1, INSD:EL173179.1,INSD:DR297977.1,INSD:DR297965.1, INSD:DR297966.1,INSD:ES020296.1,INSD:DR297954.1, INSD:ES157936.1,INSD:EL084504.1,INSD:DR297967.1, INSD:DR297958.1,INSD:DR297953.1,INSD:DR297968.1, INSD:DR297983.1,INSD:EL183229.1,INSD:EG471518.1, INSD:ES091084.1,INSD:ES055085.1,INSD:AV531122.1, INSD:DR297963.1,INSD:ES142090.1,INSD:CB074180.1, INSD:EL104194.1,INSD:DR297970.1,INSD:DR297979.1, INSD:DR297973.1,INSD:DR297960.1,INSD:DR208232.1, INSD:DR297975.1,INSD:EL173117.1,INSD:EH954827.1, INSD:ES197529.1,INSD:DR297972.1,INSD:EG528806.1, INSD:BP644113.1,INSD:DR232298.1,INSD:DR297957.1, INSD:AV551356.1,INSD:DR297986.1,INSD:ES009838.1, INSD:ES033494.1,INSD:DR297987.1,INSD:DR297980.1, INSD:DR297959.1,INSD:BP822571.1,INSD:DR297955.1, INSD:BP813484.1,INSD:BP814521.1,INSD:ES161907.1, INSD:DR297989.1,INSD:ES007382.1,INSD:AV555897.1, INSD:BP831900.1,INSD:EH979719.1" /inference="Similar to RNA sequence, mRNA:INSD:BX828590.1" /note="small nuclear ribonucleoprotein associated protein B; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleoplasm, Cajal body, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2); Has 66867 Blast hits to 32689 proteins in 1295 species: Archae - 65; Bacteria - 8747; Metazoa - 34794; Fungi - 7165; Plants - 8402; Viruses - 1350; Other Eukaryotes - 6344 (source: NCBI BLink)." /db_xref="TAIR:AT4G20440" /db_xref="Araport:AT4G20440" BEGIN 1 MSMSKSSKML QFINYRMRVT IQDGRQLVGK FMAFDRHMNL VLGDCEEFRK LPPAKGKKIN 61 EEREDRRTLG LVLLRGEEVI SMTVEGPPPP EESRAKAGSA AAVAGPGIGR AAGRGVPTGP 121 LVQAQPGLSG PVRGVGGPAP GMMQPQISRP PQLSAPPIIR PPGQMLPPPP FGGQGPPMGR 181 GPPPPYGMRP PPQQFSGPPP PQYGQRPMIP PPGGMMRGPP PPPHGMQGPP PPRPGMPPAP 241 GGFAPPRPGM PPHNQQQ //