LOCUS AEE84317.1 184 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana LSD1 zinc finger family protein protein. ACCESSION CP002687-3567 PROTEIN_ID AEE84317.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 18585056) AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G., Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N., Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M., Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R., Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M., Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M., Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W., Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L., Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J., Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I., Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U., Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M., Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C., Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J., Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S., Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A., Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D., Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S., Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O., Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S., Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F., Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T., Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A., Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D., Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P., Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W., Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M., Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E., Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M., Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G., Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A., Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N., Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M., Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S., Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K., Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C., Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D., Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A., Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N., Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M., Martienssen,R. and McCombie,W.R. TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 769-777 (1999) PUBMED 10617198 REFERENCE 2 (bases 1 to 18585056) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 18585056) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="4" /ecotype="Columbia" protein /gene="LSD1" /locus_tag="AT4G20380" /gene_synonym="F9F13.30" /gene_synonym="F9F13_30" /gene_synonym="LESION SIMULATING DISEASE" /gene_synonym="LESION SIMULATING DISEASE 1" /inference="Similar to RNA sequence, EST:INSD:ES088020.1,INSD:ES181994.1,INSD:EL315088.1, INSD:BP867847.2,INSD:ES060398.1,INSD:EL203210.1, INSD:AA042585.1,INSD:ES130634.1,INSD:EH885742.1, INSD:EL136318.1,INSD:BP659824.1,INSD:EL141964.1, INSD:ES093954.1,INSD:EL252700.1,INSD:EH939996.1, INSD:BP839583.1,INSD:AV536955.1,INSD:R84041.1, INSD:EH883877.1,INSD:EL293822.1,INSD:BP622134.1, INSD:ES155338.1,INSD:ES051314.1,INSD:CB074305.1, INSD:H76011.1,INSD:EL177633.1,INSD:BP834303.1, INSD:BP671862.1,INSD:AV542851.1,INSD:EH842946.1, INSD:T45220.1,INSD:BP624399.1,INSD:EL988474.1, INSD:ES046682.1,INSD:ES153093.1,INSD:ES046045.1, INSD:ES212646.1,INSD:AV813599.1,INSD:EL004234.1, INSD:CB259077.1,INSD:EL312409.1,INSD:EL321396.1" /inference="Similar to RNA sequence, mRNA:INSD:BX826741.1,INSD:AY117316.1" /note="LESION SIMULATING DISEASE (LSD1); CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: lsd one like 1 (TAIR:AT1G32540.1); Has 361 Blast hits to 293 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink)." /db_xref="TAIR:AT4G20380" /db_xref="Araport:AT4G20380" intron_pos 42:1 (1/5) intron_pos 77:1 (2/5) intron_pos 124:0 (3/5) intron_pos 148:0 (4/5) intron_pos 172:0 (5/5) BEGIN 1 MQDQLVCHGC RNLLMYPRGA SNVRCALCNT INMVPPPPPP HDMAHIICGG CRTMLMYTRG 61 ASSVRCSCCQ TTNLVPAHSN QVAHAPSSQV AQINCGHCRT TLMYPYGASS VKCAVCQFVT 121 NVNMSNGRVP LPTNRPNGTA CPPSTSTSTP PSQTQTVVVE NPMSVDESGK LVSNVVVGVT 181 TDKK //