LOCUS       AEE77930.1               426 aa    PRT              PLN 23-MAR-2023
DEFINITION  Arabidopsis thaliana histone deacetylase 9 protein.
ACCESSION   CP002686-5984
PROTEIN_ID  AEE77930.1
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 23459830)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 23459830)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE   3  (bases 1 to 23459830)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
FEATURES             Qualifiers
     source          /organism="Arabidopsis thaliana"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     protein         /gene="HDA9"
                     /locus_tag="AT3G44680"
                     /gene_synonym="AtHDA9"
                     /gene_synonym="HDA09"
                     /gene_synonym="HISTONE DEACETYLASE"
                     /gene_synonym="histone deacetylase 9"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES170485.1,INSD:EL995784.1,INSD:AV832062.1,
                     INSD:AV819014.1,INSD:ES149112.1,INSD:ES120498.1,
                     INSD:DR367938.1,INSD:EL009368.1,INSD:DR367937.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:BT002003.1,INSD:BT006576.1,INSD:AF512725.1,
                     INSD:BX824031.1"
                     /note="histone deacetylase 9 (HDA9); FUNCTIONS IN: histone
                     deacetylase activity; INVOLVED IN: histone deacetylation;
                     LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures;
                     EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
                     DOMAIN/s: Histone deacetylase (InterPro:IPR003084),
                     Histone deacetylase superfamily (InterPro:IPR000286); BEST
                     Arabidopsis thaliana protein match is: histone deacetylase
                     1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins
                     in 1453 species: Archae - 219; Bacteria - 3191; Metazoa -
                     1512; Fungi - 548; Plants - 472; Viruses - 0; Other
                     Eukaryotes - 2781 (source: NCBI BLink)."
                     /db_xref="TAIR:AT3G44680"
                     /db_xref="Araport:AT3G44680"
     intron_pos      13:1 (1/13)
     intron_pos      51:0 (2/13)
     intron_pos      90:1 (3/13)
     intron_pos      115:1 (4/13)
     intron_pos      188:2 (5/13)
     intron_pos      210:0 (6/13)
     intron_pos      241:0 (7/13)
     intron_pos      277:1 (8/13)
     intron_pos      294:0 (9/13)
     intron_pos      324:1 (10/13)
     intron_pos      348:0 (11/13)
     intron_pos      381:0 (12/13)
     intron_pos      403:1 (13/13)
BEGIN
        1 MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM
       61 AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE DLFEFCQLYA GGTIDAARRL
      121 NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE
      181 EAFYFTDRVM TVSFHKFGDK FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT
      241 IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
      301 TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK
      361 VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR ADQRSRDKQI QRDDEYFDGD
      421 NDNDAS
//