LOCUS AEE75005.1 1705 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana Clathrin, heavy chain protein. ACCESSION CP002686-1960 PROTEIN_ID AEE75005.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 23459830) AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M., Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B., Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P., Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V., Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S., Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P., Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S., Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H., Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M., Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A., Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C., Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P., Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M., Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S., Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L., Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A., Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B., Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J., Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X., Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M., Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S., Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 820-822 (2000) PUBMED 11130713 REFERENCE 2 (bases 1 to 23459830) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 23459830) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="3" /ecotype="Columbia" protein /locus_tag="AT3G11130" /gene_synonym="AtCHC1" /gene_synonym="CHC1" /gene_synonym="clathrin heavy chain 1" /gene_synonym="F11B9.30" /inference="Similar to RNA sequence, EST:INSD:ES143824.1,INSD:EH992183.1,INSD:AV554856.1, INSD:EL125684.1,INSD:EG503879.1,INSD:ES164377.1, INSD:EL124329.1,INSD:EL166859.1,INSD:ES070969.1, INSD:EH807818.1,INSD:ES123793.1,INSD:EL987407.1, INSD:BU635497.1,INSD:ES196248.1,INSD:AV544059.1, INSD:EL225928.1,INSD:AV554841.1,INSD:ES113240.1, INSD:EL040492.1,INSD:AV545812.1,INSD:T43744.1, INSD:ES126424.1,INSD:ES118757.1,INSD:T76474.1, INSD:AV547315.1,INSD:ES027180.1,INSD:AV540231.1, INSD:EL262721.1,INSD:AV554881.1,INSD:AV542920.1, INSD:EH898866.1,INSD:AV541492.1,INSD:EH982099.1, INSD:AV546262.1,INSD:AV548433.1,INSD:EL011946.1, INSD:AV539078.1,INSD:AV547582.1,INSD:AI993667.1, INSD:R65303.1,INSD:EL167006.1,INSD:EL147920.1, INSD:EL025865.1,INSD:EL995896.1,INSD:AV552270.1, INSD:EL314527.1,INSD:ES199317.1,INSD:AV546707.1, INSD:EH988141.1,INSD:EL308203.1,INSD:ES118110.1, INSD:AV523609.1,INSD:AV519978.1,INSD:ES103874.1, INSD:AU229160.1,INSD:EL105442.1,INSD:EL271050.1, INSD:DR358871.1,INSD:AV546055.1,INSD:EL116331.1, INSD:AV545851.1,INSD:ES075842.1,INSD:EH876874.1, INSD:AV542242.1,INSD:ES090066.1,INSD:ES151102.1, INSD:EL331281.1,INSD:BX839468.1,INSD:AV524224.1, INSD:AV547602.1,INSD:EL340905.1,INSD:AV523293.1, INSD:EL049531.1,INSD:AV543842.1,INSD:EL214959.1, INSD:AV554796.1,INSD:AV551426.1,INSD:ES139139.1, INSD:AV528941.1,INSD:EH934478.1,INSD:BX835623.1, INSD:AV547902.1,INSD:EH939054.1,INSD:AV530084.1, INSD:BU636239.1,INSD:ES140750.1,INSD:BE526904.1, INSD:EL028016.1,INSD:EL217723.1,INSD:EH919642.1, INSD:EH993354.1,INSD:BP814560.1,INSD:W43865.1, INSD:ES182973.1,INSD:N96531.1,INSD:AV552525.1, INSD:DR358872.1,INSD:AV548048.1,INSD:EH827404.1, INSD:AV529323.1,INSD:AV519357.1,INSD:AV545882.1, INSD:EL284183.1,INSD:AU238029.1,INSD:BE523905.1, INSD:ES059822.1,INSD:Z29134.1,INSD:N65570.1, INSD:EH831054.1,INSD:DR354393.1,INSD:EH932764.1, INSD:BE528606.1,INSD:EL337710.1,INSD:EL033534.1, INSD:EL330285.1,INSD:AV545876.1" /inference="Similar to RNA sequence, mRNA:INSD:AK229443.1,INSD:AK229949.1" /note="Clathrin, heavy chain; FUNCTIONS IN: structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Clathrin, heavy chain (InterPro:IPR016341), Clathrin, heavy chain, linker/propeller domain (InterPro:IPR016025), Tetratricopeptide-like helical (InterPro:IPR011990), Clathrin, heavy chain, propeller, N-terminal (InterPro:IPR001473), Clathrin, heavy chain, linker, core motif (InterPro:IPR015348), Clathrin, heavy chain, propeller repeat (InterPro:IPR022365), Armadillo-type fold (InterPro:IPR016024), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); BEST Arabidopsis thaliana protein match is: Clathrin, heavy chain (TAIR:AT3G08530.1); Has 1621 Blast hits to 1503 proteins in 495 species: Archae - 0; Bacteria - 35; Metazoa - 935; Fungi - 178; Plants - 133; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink)." /db_xref="TAIR:AT3G11130" /db_xref="Araport:AT3G11130" intron_pos 16:0 (1/29) intron_pos 84:1 (2/29) intron_pos 114:0 (3/29) intron_pos 140:1 (4/29) intron_pos 183:0 (5/29) intron_pos 216:0 (6/29) intron_pos 252:1 (7/29) intron_pos 279:0 (8/29) intron_pos 355:0 (9/29) intron_pos 377:0 (10/29) intron_pos 416:0 (11/29) intron_pos 482:0 (12/29) intron_pos 521:0 (13/29) intron_pos 541:0 (14/29) intron_pos 570:0 (15/29) intron_pos 598:0 (16/29) intron_pos 643:0 (17/29) intron_pos 664:0 (18/29) intron_pos 699:0 (19/29) intron_pos 736:2 (20/29) intron_pos 821:0 (21/29) intron_pos 866:2 (22/29) intron_pos 959:2 (23/29) intron_pos 1294:0 (24/29) intron_pos 1456:0 (25/29) intron_pos 1513:0 (26/29) intron_pos 1575:0 (27/29) intron_pos 1616:0 (28/29) intron_pos 1653:0 (29/29) BEGIN 1 MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ 61 PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE AKAKLKSHQM PEQVAFWKWI 121 TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS 181 PERPQLVKGN MQLFSVDQQR SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS 241 KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL 301 ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL 361 AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES PQGILRTPDT VAKFQSVPVQ 421 AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV 481 KTVDNDLALK IYIKARATPK VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ 541 GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE 601 INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI 661 EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC KEYCEQLGVD ACIKLFEQFK 721 SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA 781 KLPDARPLIN VCDRFGFVPD LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE 841 DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS 901 NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY 961 VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE QVSAAVKAFM TADLPHELIE 1021 LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE 1081 EAFAIFKKFN LNVQAVNVLL DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE 1141 SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI 1201 EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK 1261 ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV SEYYQNRGCF NELISLMESG 1321 LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI 1381 QYDEFDNAAT TVMNHSPEAW EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL 1441 ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL 1501 HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD 1561 HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA WINNMIDFAF PYLLQFIREY 1621 SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP 1681 QMGGMPGMSG MPPMPPYGMP PMGGY //