LOCUS AEC10875.1 1015 aa PRT PLN 23-MAR-2023 DEFINITION Arabidopsis thaliana zinc finger (CCCH type) helicase family protein protein. ACCESSION CP002685-7496 PROTEIN_ID AEC10875.1 SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 19698289) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 19698289) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA REFERENCE 3 (bases 1 to 19698289) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter FEATURES Qualifiers source /organism="Arabidopsis thaliana" /mol_type="genomic DNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" protein /locus_tag="AT2G47680" /gene_synonym="F17A22.7" /inference="Similar to RNA sequence, EST:INSD:BX835827.1,INSD:EH808920.1,INSD:BX839837.1, INSD:BE524696.1,INSD:EH804444.1" /note="zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 9601 Blast hits to 8936 proteins in 1526 species: Archae - 0; Bacteria - 3317; Metazoa - 2456; Fungi - 1337; Plants - 806; Viruses - 205; Other Eukaryotes - 1480 (source: NCBI BLink)." /db_xref="Araport:AT2G47680" /db_xref="TAIR:AT2G47680" intron_pos 54:1 (1/13) intron_pos 113:2 (2/13) intron_pos 171:2 (3/13) intron_pos 221:0 (4/13) intron_pos 324:0 (5/13) intron_pos 373:0 (6/13) intron_pos 433:1 (7/13) intron_pos 526:0 (8/13) intron_pos 565:0 (9/13) intron_pos 613:1 (10/13) intron_pos 703:0 (11/13) intron_pos 768:0 (12/13) intron_pos 946:0 (13/13) BEGIN 1 MAVSSPTSSS SSSESLPLPS SNFASLPIMA MKRRIIDKIL ENRVTLIVGE PGCGKSSQVP 61 QFLLEANMAP ILCTQPRRFA VVAVAKMVAK SRNSDLGGEI GYHIGHSKIL TEGSKILFKT 121 AGVLLDEMLD KGLNALKYKV IILDEVHERS VESDLVLVCV KQFLMKNNDL RVVLMSATAD 181 ITRYRDYFKE LGRGERVEVV AIPSPDQRTI FQRRVLYLEQ VAGLLGVSSD LSAYCPGPSP 241 SSADTEIKPE LQNLIHDLIL YIHEKEPDIE KSILVFLPTY YSLEQQYHQL EPFFASFEVH 301 ILHRSIDTEQ ALAAMKICRS RRKVILATNI AESSVTIPKV AYVIDSCRSL QVFWDPSRKR 361 DAVQLVWVSR SQAEQRRGRT GRTCDGEVYR LVPSAFFNKL EEHEPPSILK LSLRQQVLHI 421 CCTESRAIND ANALLAKAMD PPDPDVVDDA LRMLLSIQAL RKSPRGRYEP TFYGRLLASF 481 PLSFDASILV VKFGEMGMLR QGILLGVLMD TLPLPIHHPF GDDSLFLEYV DHYFGGSKTI 541 SGGRREMVLM ANFCAFQFWQ RVFKDKHRLE NLKQLLSKEK DKDLKLMFPE IEKEWCDFHN 601 IAQSSFYHVS ELYEDTLSSF HRFRPQFISS SDSQPTYYNP YEFDHTCYIE CQPSEDKYLH 661 SEDVDNNQPP PEVRKCVSVP FVPPNAFQAN AIAENMASII KEIRTQCTPS ESDNGHGALE 721 PEDYVEYGEA PVCVYFLNGY CNRGGQCTFT HTLQSTRPAC KFFASSQGCR NGESCLFSHA 781 MRRRTTSYLP PPQCLPEEDG SSTSPLLDLF PTSSEGCILV FDDSDMHFTS SIANRYPSWR 841 ILSTSSSSET LFCDSSLADT RIFWGLNHPY QTIISKAGRE NPIPWNEVKC VLWFLNPDSY 901 ADTPEKQKTI LQNFFEHMAI RLLGDKLYKI RVVLTMNNVR FSLLQVEKLA RESFFFLGES 961 FPHDSESFGA FQDTLTIQKP MLVSRPISYV FNLHPPSDIQ FGNYTSLLRK SLHNK //