LOCUS       AEC09639.1               410 aa    PRT              PLN 23-MAR-2023
DEFINITION  Arabidopsis thaliana pseudouridine synthase family protein protein.
ACCESSION   CP002685-5796
PROTEIN_ID  AEC09639.1
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 19698289)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 19698289)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE   3  (bases 1 to 19698289)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
FEATURES             Qualifiers
     source          /organism="Arabidopsis thaliana"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     protein         /gene="SVR1"
                     /locus_tag="AT2G39140"
                     /gene_synonym="AT2G39150"
                     /gene_synonym="PDE328"
                     /gene_synonym="PIGMENT DEFECTIVE 328"
                     /gene_synonym="SUPPRESSOR OF VARIEGATION 1"
                     /gene_synonym="T16B24.22"
                     /gene_synonym="T16B24_22"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EG446777.1,INSD:AV560191.1,INSD:DR237207.1,
                     INSD:AA651085.1,INSD:EL180373.1,INSD:EG429413.1,
                     INSD:EH912969.1,INSD:EL135767.1,INSD:EL151450.1,
                     INSD:AI993553.1,INSD:EG429425.1,INSD:AU238524.2,
                     INSD:BP790536.1,INSD:H37525.1,INSD:EG446772.1,
                     INSD:EG447239.1,INSD:EH828455.1,INSD:EG447237.1,
                     INSD:EL306008.1,INSD:EH840833.1,INSD:AU229716.1,
                     INSD:EG446766.1,INSD:R65390.1,INSD:EL085402.1,
                     INSD:EL323481.1,INSD:EG446765.1,INSD:ES041655.1,
                     INSD:EG429426.1,INSD:EG447238.1,INSD:EG447240.1,
                     INSD:EH888716.1,INSD:EG446767.1,INSD:EH795936.1,
                     INSD:EG429421.1,INSD:EG429415.1,INSD:EG429428.1,
                     INSD:EG429411.1,INSD:EL019755.1,INSD:EG446771.1,
                     INSD:EG429427.1,INSD:EG446773.1,INSD:EH925118.1,
                     INSD:EG429422.1,INSD:EL148596.1,INSD:EG429417.1,
                     INSD:EL265310.1,INSD:EH902930.1,INSD:EL123916.1,
                     INSD:EG429423.1,INSD:EG446774.1,INSD:EG447241.1,
                     INSD:EG446770.1,INSD:EG429414.1,INSD:EG429412.1,
                     INSD:EG429416.1,INSD:AV557529.1,INSD:EG429424.1,
                     INSD:EH839314.1,INSD:BX834293.1,INSD:EG446776.1,
                     INSD:BX837191.1,INSD:EG446768.1,INSD:DR237208.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY088622.1,INSD:BX842445.1,INSD:AK117682.1"
                     /note="SUPPRESSOR OF VARIEGATION 1 (SVR1); CONTAINS
                     InterPro DOMAIN/s: Pseudouridine synthase, catalytic
                     domain (InterPro:IPR020103), Pseudouridine synthase, RsuA
                     and RluB/C/D/E/F (InterPro:IPR006145), RNA-binding S4
                     (InterPro:IPR002942), Pseudouridine synthase, RsuA and
                     RluB/E/F, conserved site (InterPro:IPR018496); BEST
                     Arabidopsis thaliana protein match is: Pseudouridine
                     synthase family protein (TAIR:AT3G43340.1); Has 12713
                     Blast hits to 12709 proteins in 2415 species: Archae - 0;
                     Bacteria - 10639; Metazoa - 2; Fungi - 2; Plants - 70;
                     Viruses - 0; Other Eukaryotes - 2000 (source: NCBI
                     BLink)."
                     /db_xref="Araport:AT2G39140"
                     /db_xref="TAIR:AT2G39140"
     intron_pos      198:0 (1/8)
     intron_pos      231:2 (2/8)
     intron_pos      256:0 (3/8)
     intron_pos      287:1 (4/8)
     intron_pos      303:2 (5/8)
     intron_pos      354:0 (6/8)
     intron_pos      373:0 (7/8)
     intron_pos      391:2 (8/8)
BEGIN
        1 MASVAASSSI SFAASFLKIK AFPLSPRFFP IRTLRCSVSS SSSEPIEFDI SFAPPKPKPS
       61 STHGGVTPQQ LFIPWIVRSD DGTLKLQSQP PARLIHNLAI DATTQNPKKK DKSKKKQPQA
      121 TSSSSATTTA SSPASHSEVK PKLSKAARRF YNENFKEQPQ RLSKVLAAAG VASRRTSEEL
      181 IFDGKVTVNG ILCNTPQTRV DPSRDIIYVN GNRIPKKLPP KVYFALNKPK GYICSSGEKE
      241 IKSAISLFDE YLSSWDKRNP GTPKPRLFTV GRLDVATTGL IVVTNDGDFA QKLSHPSSSL
      301 PKEYITTVVG DIHKRHLMAI SEGTMVEGVH CVPDSVELMP KQHDIPRARL RIVVHEGRNH
      361 EVRELVKNAG LEVHSLKRVR IGGFRLPSDL GLGKHVELKQ SELKALGWKN
//