LOCUS       AEC07329.1               677 aa    PRT              PLN 23-MAR-2023
DEFINITION  Arabidopsis thaliana Rhamnogalacturonate lyase family
            protein protein.
ACCESSION   CP002685-2633
PROTEIN_ID  AEC07329.1
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 19698289)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 19698289)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE   3  (bases 1 to 19698289)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
FEATURES             Qualifiers
     source          /organism="Arabidopsis thaliana"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     protein         /locus_tag="AT2G22620"
                     /gene_synonym="T9I22.6"
                     /gene_synonym="T9I22_6"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AV558241.1,INSD:BE525896.1,INSD:ES160545.1,
                     INSD:Z17718.1,INSD:EL991962.1,INSD:EG486176.1,
                     INSD:ES163178.1,INSD:EG519382.1,INSD:BE530868.1,
                     INSD:ES018406.1,INSD:BP833673.1,INSD:N96076.1,
                     INSD:AA728496.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BT012575.1,INSD:AK176148.1"
                     /note="Rhamnogalacturonate lyase family protein; FUNCTIONS
                     IN: lyase activity; INVOLVED IN: carbohydrate metabolic
                     process; EXPRESSED IN: 9 plant structures; EXPRESSED
                     DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s:
                     Glycoside hydrolase-type carbohydrate-binding
                     (InterPro:IPR011013), Rhamnogalacturonate lyase
                     (InterPro:IPR010325), Carbohydrate-binding-like fold
                     (InterPro:IPR013784), Galactose-binding domain-like
                     (InterPro:IPR008979); BEST Arabidopsis thaliana protein
                     match is: Rhamnogalacturonate lyase family protein
                     (TAIR:AT4G37950.1); Has 306 Blast hits to 289 proteins in
                     68 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi
                     - 87; Plants - 167; Viruses - 0; Other Eukaryotes - 1
                     (source: NCBI BLink)."
                     /db_xref="Araport:AT2G22620"
                     /db_xref="TAIR:AT2G22620"
     intron_pos      35:2 (1/14)
     intron_pos      62:0 (2/14)
     intron_pos      100:2 (3/14)
     intron_pos      117:2 (4/14)
     intron_pos      157:2 (5/14)
     intron_pos      197:2 (6/14)
     intron_pos      243:0 (7/14)
     intron_pos      300:0 (8/14)
     intron_pos      352:0 (9/14)
     intron_pos      387:2 (10/14)
     intron_pos      418:0 (11/14)
     intron_pos      465:1 (12/14)
     intron_pos      518:2 (13/14)
     intron_pos      557:2 (14/14)
BEGIN
        1 MKVGAPASKP GRIIVQVFLL QLLLLLQSVH SQRSQNKLNI TKPGQNIPAL TVQLRRVGHD
       61 TVVVDNGIVQ VTFSNPEGLI TGIKYHGIDN VLDDKIDDRG YWDVVWYEPE KKQKTDKLEG
      121 TKFEIITQNE EQIEISFTRT WTISRRGSLV PLNVDKRYII RSGVSGLYMY GILERLEGWP
      181 DVDMDQIRIV FKLNPKKFDF MAISDDRQRS MPSMADRENS KSLAYKEAVL LTNPSNPMFK
      241 GEVDDKYMYS MEDKDNNVHG WISSDPPVGF WMITPSDEFR LGGPIKQDLT SHAGPITLSM
      301 FTSTHYAGKE MRMDYRNGEP WKKVFGPVLA YLNSVSPKDS TLRLWRDAKR QMAAEVKSWP
      361 YDFITSEDYP LRHQRGTLEG QFLIKDSYVS RLKIYGKFAF VGLAPIGEAG SWQTESKGYQ
      421 FWTKADRRGR FIIENVRAGN YSLYAWGSGF IGDYKYEQNI TITPGSEMNV GPLVYEPPRN
      481 GPTLWEIGVP DRTAGEFYIP DPYPTLMNKL YVNPLQDRFR QYGLWDRYAD LYPQNDLVYT
      541 IGVSDYRSDW FFAHVARNVG NDTYQPTTWQ IIFNLKNVNR IGRYTLRIAL ASAADSELQI
      601 RINDPKSDAI FTTGFIGKDN AIARHGIHGL YRLYSIDVAG NLLSVGDNTI FLTQTRSRTP
      661 FQGIMYDYIR LESPFRT
//