LOCUS       AEC07152.1               319 aa    PRT              PLN 23-MAR-2023
DEFINITION  Arabidopsis thaliana ubiquitin fusion degradation 1 protein.
ACCESSION   CP002685-2398
PROTEIN_ID  AEC07152.1
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 19698289)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 19698289)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE   3  (bases 1 to 19698289)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
FEATURES             Qualifiers
     source          /organism="Arabidopsis thaliana"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     protein         /gene="UFD1"
                     /locus_tag="AT2G21270"
                     /gene_synonym="F3K23.3"
                     /gene_synonym="F3K23_3"
                     /gene_synonym="ubiquitin fusion degradation 1"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP784721.1,INSD:DR222991.1,INSD:DR222992.1,
                     INSD:EL050522.1,INSD:DR222990.1,INSD:DR222996.1,
                     INSD:AV825203.1,INSD:AV530806.1,INSD:CD532765.1,
                     INSD:ES014122.1,INSD:BP570536.1,INSD:DR222997.1,
                     INSD:BP610593.1,INSD:DR222993.1,INSD:ES085168.1,
                     INSD:BP779381.1,INSD:EH830891.1,INSD:EL276456.1,
                     INSD:EL290461.1,INSD:EL061266.1,INSD:EH923662.1,
                     INSD:EL341234.1,INSD:EL013369.1,INSD:DR222986.1,
                     INSD:AA597474.1,INSD:DR223000.1,INSD:ES176320.1,
                     INSD:ES206819.1,INSD:EH922923.1,INSD:BP823248.1,
                     INSD:BP788001.1,INSD:ES169691.1,INSD:ES017731.1,
                     INSD:DR222987.1,INSD:EL109406.1,INSD:ES020140.1,
                     INSD:DR222983.1,INSD:DR222999.1,INSD:DR222994.1,
                     INSD:ES161227.1,INSD:AV790473.1,INSD:DR222998.1,
                     INSD:DR375340.1,INSD:EG468449.1,INSD:BP821777.1,
                     INSD:DR222985.1,INSD:ES181949.1,INSD:DR222989.1,
                     INSD:CF651793.1,INSD:DR222984.1,INSD:BP602667.1,
                     INSD:EH877571.1,INSD:DR222995.1,INSD:DR222988.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AK226526.1,INSD:AY087347.1"
                     /note="ubiquitin fusion degradation 1 (UFD1); FUNCTIONS
                     IN: molecular_function unknown; INVOLVED IN:
                     ubiquitin-dependent protein catabolic process; EXPRESSED
                     IN: 24 plant structures; EXPRESSED DURING: 13 growth
                     stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion
                     degradation protein UFD1 (InterPro:IPR004854); BEST
                     Arabidopsis thaliana protein match is: Ubiquitin fusion
                     degradation UFD1 family protein (TAIR:AT4G38930.2); Has
                     702 Blast hits to 700 proteins in 221 species: Archae - 8;
                     Bacteria - 2; Metazoa - 164; Fungi - 209; Plants - 127;
                     Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink)."
                     /db_xref="Araport:AT2G21270"
                     /db_xref="TAIR:AT2G21270"
     intron_pos      2:0 (1/8)
     intron_pos      28:0 (2/8)
     intron_pos      36:1 (3/8)
     intron_pos      47:1 (4/8)
     intron_pos      88:0 (5/8)
     intron_pos      131:2 (6/8)
     intron_pos      205:1 (7/8)
     intron_pos      288:0 (8/8)
BEGIN
        1 MFFDGYHYHG TTFEQSYRCY PASFIDKPQL ESGDKIIMPP SALDRLASLH IDYPMLFELR
       61 NAGIERVTHC GVLEFIAEEG MIYMPYWMMQ NLLLQEGDIV RVRNVTLPKG TYVKLQPHTT
      121 DFLDISNPKA ILETALRNYS CLTSGDSIMV PYNNKKYFID IVETKPANAI SIIETDCEVD
      181 FAPPLDYKEP ERPTAPSAAK GPAKAEEVVD EPEPKFNPFT GSGRRLDGRP LAYEPAPASS
      241 SKGKQPVVAN GNGQSSVASS SEKATRAQGK LVFGANGNRA PKEAAPKVGA AKETKKEEQE
      301 KKDEPKFQAF SGKKYSLRG
//