LOCUS BC068030 2002 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ciliary neurotrophic factor, mRNA (cDNA clone
MGC:75418 IMAGE:30407481), complete cds.
ACCESSION BC068030
VERSION BC068030.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2002)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2002)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Michael Brownstein
cDNA Library Preparation: Invitrogen Corp
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: p Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25952136.
FEATURES Location/Qualifiers
source 1..2002
/db_xref="H-InvDB:HIT000262897"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:75418 IMAGE:30407481"
/tissue_type="White Matter pool- 5 brain tissues- femoral
artery, olfactory tract, optic tract, cerebellar white
matter, cerebral white matter."
/clone_lib="NIH_MGC_181"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..2002
/gene="CNTF"
/gene_synonym="HCNTF"
/db_xref="GeneID:1270"
/db_xref="HGNC:HGNC:2169"
/db_xref="MIM:118945"
CDS 76..678
/gene="CNTF"
/gene_synonym="HCNTF"
/codon_start=1
/product="ciliary neurotrophic factor"
/protein_id="AAH68030.1"
/db_xref="GeneID:1270"
/db_xref="HGNC:HGNC:2169"
/db_xref="MIM:118945"
/translation="MAFTEHSPLTPHRRDLCSRSIWLARKIRSDLTALTESYVKHQGL
NKNINLDSADGMPVASTDQWSELTEAERLQENLQAYRTFHVLLARLLEDQQVHFTPTE
GDFHQAIHTLLLQVAAFAYQIEELMILLEYKIPRNEADGMPINVGDGGLFEKKLWGLK
VLQELSQWTVRSIHDLRFISSHQTGIPARGSHYIANNKKM"
BASE COUNT 626 a 409 c 427 g 540 t
ORIGIN
1 cacatctctt atttggacca gtatagacag aagtaaaccc agctgacttg tttcctggga
61 cagttgagtt aagggatggc tttcacagag cattcaccgc tgacccctca ccgtcgggac
121 ctctgtagcc gctctatctg gctagcaagg aagattcgtt cagacctgac tgctcttacg
181 gaatcctatg tgaagcatca gggcctgaac aagaacatca acctggactc tgcggatggg
241 atgccagtgg caagcactga tcagtggagt gagctgaccg aggcagagcg actccaagag
301 aaccttcaag cttatcgtac cttccatgtt ttgttggcca ggctcttaga agaccagcag
361 gtgcatttta ccccaaccga aggtgacttc catcaagcta tacataccct tcttctccaa
421 gtcgctgcct ttgcatacca gatagaggag ttaatgatac tcctggaata caagatcccc
481 cgcaatgagg ctgatgggat gcctattaat gttggagatg gtggtctctt tgagaagaag
541 ctgtggggcc taaaggtgct gcaggagctt tcacagtgga cagtaaggtc catccatgac
601 cttcgtttca tttcttctca tcagactggg atcccagcac gtgggagcca ttatattgct
661 aacaacaaga aaatgtagca gttagtccct tctctcttcc ttgctttctc ttctaatgga
721 atatgcgtag ttccctgggg cctcgctttc ccatcttaaa tttctaaaaa cagttaagac
781 aacaggcatt ttctttcttt tttctctgac cacctgcagc ctgttgaagg actacaggta
841 ttttcatcaa gtagcgttgg agacatacac aaatgggcat acaagtttag cctggggggt
901 gtgatttgtg tgcgtgcttg catgtgctgc aggtgtaaga gagtgggagc agggacaacg
961 tccttccact tcagggttct aacctttcta acccactaag taacctctac aggcatttaa
1021 ctgccttaca gacagaatat acatatgtta attctagtcc tggatgactc ggtctgagaa
1081 gattcaattt aaaatcagac tctttagttg atttaaactc ttagagaata agaataataa
1141 tggctaactt ttattatctt ctatattaag gcagtatgcc aagggtcttt atgtatatta
1201 tgtacagcgt ttacaacctt gtgagcaagg tggtgttact cccattaggt agatgagaaa
1261 acaggctcac agagatttgg ttaagctcac acagctaaca agtagcacac tgagtttgaa
1321 cacagatcat tctccttgta aaagcctatg tgcctttcac tttagaggct tgatcatgaa
1381 tcactgcacc tctttgtcac agggtgttgg aagatgcatc catgtaatct attcccatcg
1441 ctggaaaaca gctgctgtta gatgtcctca gaagtcagtt gcaaatttta gcgttaaagt
1501 caggatttat tgttcatact tggcggtgag gagggcagct ggagatctta agattccatt
1561 ttggaaaatg attaggcccg ccaaacttct gaactttgga agctggggat gtttagtaat
1621 acagcctggt tttcaagtac tcactaaaag ttctcaaata ttgggttggg cacggcttat
1681 accaggttac ctcactttta attagtgatg caggcagtgt aacccaagca tttgtggaca
1741 atgagtggaa tactaaagtt aaaaagtcaa actttcacct cagattttct ggacttagtc
1801 atgaggagag ggtgaggccc actctgttcc tactggagat accagagact ctgaaactat
1861 agaataaagc ctctgtgctg cacaacaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1921 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaaaaa aaaaaaaaaa aa
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