LOCUS BC050530 4257 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens damage-specific DNA binding protein 1, 127kDa, mRNA
(cDNA clone MGC:57561 IMAGE:5563018), complete cds.
ACCESSION BC050530
VERSION BC050530.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4257)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4257)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-APR-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 107 Row: g Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13435358.
FEATURES Location/Qualifiers
source 1..4257
/db_xref="H-InvDB:HIT000053478"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:57561 IMAGE:5563018"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4257
/gene="DDB1"
/gene_synonym="DDBA"
/gene_synonym="UV-DDB1"
/gene_synonym="XAP1"
/gene_synonym="XPCE"
/gene_synonym="XPE"
/gene_synonym="XPE-BF"
/db_xref="GeneID:1642"
/db_xref="HGNC:HGNC:2717"
/db_xref="MIM:600045"
CDS 138..3560
/gene="DDB1"
/gene_synonym="DDBA"
/gene_synonym="UV-DDB1"
/gene_synonym="XAP1"
/gene_synonym="XPCE"
/gene_synonym="XPE"
/gene_synonym="XPE-BF"
/codon_start=1
/product="damage-specific DNA binding protein 1, 127kDa"
/protein_id="AAH50530.1"
/db_xref="GeneID:1642"
/db_xref="HGNC:HGNC:2717"
/db_xref="MIM:600045"
/translation="MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVV
TAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIIT
RAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE
ELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASM
VIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDM
EGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLV
KLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRN
GIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMG
FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQV
VVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISA
RILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS
DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPL
NSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRI
EVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT
FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG
KLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYL
KTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAF
NLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLF
GTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGF
IDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH"
BASE COUNT 1006 a 1066 c 1146 g 1039 t
ORIGIN
1 ggcctgcaac gtgtctctgg ggcggaggca gcggcagtgg agttcgctgc gcgctgttgg
61 gggccacctg tcttttcgct tgtgtccctc tttctagtgt cgcgctcgag tcccgacggg
121 ccgctccaag cctcgacatg tcgtacaact acgtggtaac ggcccagaag cccaccgccg
181 tgaacggctg cgtgaccgga cactttactt cggccgaaga cttaaacctg ttgattgcca
241 aaaacacgag attagagatc tatgtggtca ccgccgaggg gcttcggccc gtcaaagagg
301 tgggcatgta tgggaagatt gcggtcatgg agcttttcag gcccaagggg gagagcaagg
361 acctgctgtt tatcttgaca gcgaagtaca atgcctgcat cctggagtat aaacagagtg
421 gcgagagcat tgacatcatt acgcgagccc atggcaatgt ccaggaccgc attggccgcc
481 cctcagagac cggcattatt ggcatcattg accctgagtg ccggatgatt ggcctgcgtc
541 tctatgatgg ccttttcaag gttattccac tagatcgcga taataaagaa ctcaaggcct
601 tcaacatccg cctggaggag ctgcatgtca ttgatgtcaa gttcctatat ggttgccaag
661 cacctactat ttgctttgtc taccaggacc ctcaggggcg gcacgtaaaa acctatgagg
721 tgtctctccg agaaaaggaa ttcaataagg gcccttggaa acaggaaaat gtcgaagctg
781 aagcttccat ggtgatcgca gtcccagagc cctttggggg ggccatcatc attggacagg
841 agtcaatcac ctatcacaat ggtgacaaat acctggctat tgcccctcct atcatcaagc
901 aaagcacgat tgtgtgccac aatcgagtgg accctaatgg ctcaagatac ctgctgggag
961 acatggaagg ccggctcttc atgctgcttt tggagaagga ggaacagatg gatggcaccg
1021 tcactctcaa ggatctccgt gtagaactcc ttggagagac ctctattgct gagtgcttga
1081 cataccttga taatggtgtt gtgtttgtcg ggtctcgcct gggtgactcc cagcttgtga
1141 agctcaacgt tgacagtaat gaacaaggct cctatgtagt ggccatggaa acctttacca
1201 acttaggacc cattgtcgat atgtgcgtgg tggacctgga gaggcagggg caggggcagc
1261 tggtcacttg ctctggggct ttcaaggaag gttctttgcg gatcatccgg aatggaattg
1321 gaatccacga gcatgccagc attgacttac caggcatcaa aggattatgg ccactgcggt
1381 ctgaccctaa tcgtgagact gatgacactt tggtgctctc ttttgtgggc cagacaagag
1441 ttctcatgtt aaatggagag gaggtagaag aaaccgaact gatgggtttc gtggatgatc
1501 agcagacttt cttctgtggc aacgtggctc atcagcagct tatccagatc acttcagcat
1561 cggtgaggtt ggtctctcaa gaacccaaag ctctggtcag tgaatggaag gagcctcagg
1621 ccaagaacat cagtgtggcc tcctgcaata gcagccaggt ggtggtggct gtaggcaggg
1681 ccctctacta tctgcagatc catcctcagg agctccggca gatcagccac acagagatgg
1741 aacatgaagt ggcttgcttg gacatcaccc cattaggaga cagcaatgga ctgtcccctc
1801 tttgtgccat tggcctctgg acggacatct cggctcgtat cttgaagttg ccctcttttg
1861 aactactgca caaggagatg ctgggtggag agatcattcc tcgctccatc ctgatgacca
1921 cctttgagag tagccattac ctcctttgtg ccttgggaga tggagcgctt ttctactttg
1981 ggctcaacat tgagacaggt ctgttgagcg accgtaagaa ggtgactttg ggcacccagc
2041 ccaccgtatt gaggactttt cgttctcttt ctaccaccaa cgtctttgct tgttctgacc
2101 gccccactgt catctatagc agcaaccaca aattggtctt ctcaaatgtc aacctcaagg
2161 aagtgaacta catgtgtccc ctcaattcag atggctatcc tgacagcctg gcgctggcca
2221 acaatagcac cctcaccatt ggcaccatcg atgagatcca gaagctgcac attcgcacag
2281 ttcccctcta tgagtctcca aggaagatct gctaccagga agtgtcccag tgtttcgggg
2341 tcctctccag ccgcattgaa gtccaagaca cgagtggggg cacgacagcc ttgaggccca
2401 gcgctagcac ccaggctctg tccagcagtg taagctccag caagctgttc tccagcagca
2461 ctgctcctca tgagacctcc tttggagaag aggtggaggt gcacaaccta cttatcattg
2521 accaacacac ctttgaagtg cttcatgccc accagtttct gcagaatgaa tatgccctca
2581 gtctggtttc ctgcaagctg ggcaaagacc ccaacactta cttcattgtg ggcacagcaa
2641 tggtgtatcc tgaagaggca gagcccaagc agggtcgcat tgtggtcttt cagtattcgg
2701 atggaaaact acagactgtg gctgaaaagg aagtgaaagg ggccgtgtac tctatggtgg
2761 aatttaacgg gaagctgtta gccagcatca atagcacggt gcggctctat gagtggacaa
2821 cagagaagga gctgcgcact gagtgcaacc actacaacaa catcatggcc ctctacctga
2881 agaccaaggg cgacttcatc ctggtgggcg accttatgcg ctcagtgctg ctgcttgcct
2941 acaagcccat ggaaggaaac tttgaagaga ttgctcgaga ctttaatccc aactggatga
3001 gtgctgtgga aatcttggat gatgacaatt ttctgggggc tgaaaatgcc tttaacttgt
3061 ttgtgtgtca aaaggatagc gctgccacca ctgacgagga gcggcagcac ctccaggagg
3121 ttggtctttt ccacctgggc gagtttgtca atgtcttttg ccacggctct ctggtaatgc
3181 agaatctggg tgagacttcc acccccacac aaggctcggt gctcttcggc acggtcaacg
3241 gcatgatagg gctggtgacc tcactgtcag agagctggta caacctcctg ctggacatgc
3301 agaatcgact caataaagtc atcaaaagtg tggggaagat cgagcactcc ttctggagat
3361 cctttcacac cgagcggaag acagaaccag ccacaggttt catcgacggt gacttgattg
3421 agagtttcct ggatattagc cgccccaaga tgcaggaggt ggtggcaaac ctacagtatg
3481 acgatggcag cggtatgaag cgagaggcca ctgcagacga cctcatcaag gttgtggagg
3541 agctaactcg gatccattag ccaagggcag ggggcccctt tgctgaccct ccccaaaggc
3601 tttgccctgc tgccctcccc ctcctctcca ccatcgtctt cttggccatg ggaggccttt
3661 ccctaagcca gctgccccca gagccacagt tcccctatgt ggaagtgggg cgggcttcat
3721 agagacttgg gaatgagctg aaggtgaaac attttctccc tggattttta ccagtctcac
3781 atgattccag ccatcacctt agaccaccaa gccttgattg gtgttgccag ttgtcctcct
3841 tccggggaag gattttgcag ttctttggct gaaaggaagc tgtgcgtgtg tgtgtgtgta
3901 tgtgtgtgtg tgtatgtgta tctcacactc atgcattgtc ctctttttat ttagattggc
3961 agtgtaggga gttgtgggta gtggggaaga gggttaggag ggtttcattg tctgtgaagt
4021 gagaccttcc ttttactttt cttctattgc ctctgagagc atcaggccta gaggcctgac
4081 tgccaagcca tgggtagcct gggtgtaaaa cctggagatg gtggatgatc cccacgccac
4141 agcccttttg tctctgcaaa ctgccttctt cggaaagaag aaggtgggag gatgtgaatt
4201 gttagtttct gagttttacc aaataaagta gaatataaga aaaaaaaaaa aaaaaaa
//