LOCUS       BC048282                2533 bp    mRNA    linear   HUM 01-SEP-2006
DEFINITION  Homo sapiens chloride channel Ka, mRNA (cDNA clone MGC:51919
            IMAGE:5184165), complete cds.
ACCESSION   BC048282
VERSION     BC048282.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2533)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2533)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2003) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Life Technologies, Inc.
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: National Institutes of Health Intramural
            Sequencing Center (NISC),
            Gaithersburg, Maryland;
            Web site: http://www.nisc.nih.gov/
            Contact: nisc_mgc@nhgri.nih.gov
            Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
            Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
            Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
            Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
            Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
            McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
            Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
            Young,A., Zhang,L.-H. and Green,E.D.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 93 Row: h Column: 23
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 31542310.
FEATURES             Location/Qualifiers
     source          1..2533
                     /db_xref="H-InvDB:HIT000053314"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:51919 IMAGE:5184165"
                     /tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
                     /clone_lib="NIH_MGC_116"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..2533
                     /gene="CLCNKA"
                     /gene_synonym="ClC-K1"
                     /gene_synonym="CLCK1"
                     /gene_synonym="hClC-Ka"
                     /gene_synonym="MGC61490"
                     /db_xref="GeneID:1187"
                     /db_xref="HGNC:HGNC:2026"
                     /db_xref="MIM:602024"
     CDS             6..2069
                     /gene="CLCNKA"
                     /gene_synonym="ClC-K1"
                     /gene_synonym="CLCK1"
                     /gene_synonym="hClC-Ka"
                     /gene_synonym="MGC61490"
                     /codon_start=1
                     /product="chloride channel Ka"
                     /protein_id="AAH48282.1"
                     /db_xref="GeneID:1187"
                     /db_xref="HGNC:HGNC:2026"
                     /db_xref="MIM:602024"
                     /translation="MEELVGLREGFSGDPVTLQELWGPCPHIRRAIQGGLEWLKQKVF
                     RLGEDWYFLMTLGVLMALVSYAINFAIGCVVRAHQWLYREIGDSHLLRYLSWTVYPVA
                     LVSFSSGFSQSITPSSGGSGIPELKTMLAGVILEDYLDIKNFGAKVVGLSCTLATGST
                     LFLGKVGPFVHLSVMIAAYLGRVRTTTIGEPENKSKQNEMLVAAAAVGVATVFAAPFS
                     GVLFSIEVMSSHFSVRDYWRGFFAATCGAFIFRLLAVFNSEQETITSLYKTSFRVDVP
                     FDLPEIFFFVALGGICGVLSCAYLFCQRTFLSFIKTNRFSSKLLATSKPVYSALATLL
                     LASITYPPGVGHFLASRLSMKQHLDSLFDNHSWALMTQNSSPPWPEELDPQHLWWEWY
                     HPRFTIFGTLAFFLVMKFWMLILATTIPMPAGYFMPIFILGAAIGRLLGEALAVAFPE
                     GIVTGGVTNPIMPGGYALAGAAAFSGAVTHTISTALLAFELTGQIVHALPVLMAVLAA
                     NAIAQSCQPSFYDGTIIVKKLPYLPRILGRNIGSHHVRVEHFMNHSITTLAKDTPLEE
                     VVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILAR
                     GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMKKAISNLTN
                     PPAPK"
BASE COUNT          540 a          764 c          689 g          540 t
ORIGIN      
        1 gcctgatgga ggagttggtg gggctgcgtg agggcttctc aggggaccct gtgactctgc
       61 aggagctgtg gggcccctgt ccccacatcc gccgagccat ccaaggtggc ctggagtggc
      121 taaagcagaa ggtgttccgc ctgggagaag actggtactt cctgatgacc ctcggggtgc
      181 tcatggccct ggtcagctat gccataaact ttgccatcgg gtgtgtggtc cgagcacacc
      241 agtggctgta cagggagatt ggggacagcc acctgctccg gtatctttcc tggactgtgt
      301 accctgtggc cctcgtctct ttctcctcag gcttctccca gagcatcacg ccctcctctg
      361 gaggttctgg aatcccggag ctgaagacca tgttggcggg tgtgatcttg gaggactacc
      421 tggatatcaa gaactttggg gccaaggtgg tgggcctctc ctgcaccctg gccaccggca
      481 gcaccctgtt cctgggcaaa gtgggccctt tcgtgcacct gtctgtaatg atcgctgcct
      541 acctgggccg tgtgcgcacc acgaccatcg gggagcctga gaacaagagc aagcaaaacg
      601 aaatgctggt ggcagcggcg gcagtgggcg tggccacagt ctttgcagct cccttcagcg
      661 gcgtcctgtt cagcatcgag gtcatgtctt cccacttctc tgtccgggat tactggaggg
      721 gcttctttgc ggccacctgc ggggccttca tattccggct cctggcagtc ttcaacagcg
      781 agcaggagac catcacctcc ctctacaaga ccagtttccg ggtggacgtt cccttcgacc
      841 tgcctgagat cttctttttt gtggcgctgg gtggcatctg cggcgtcctg agctgtgctt
      901 acctcttctg tcagcgaacc ttcctcagct tcatcaagac caatcggttc agctccaaac
      961 tgctggctac tagcaagcct gtgtactccg ctctggccac cttgcttctc gcctccatca
     1021 cctacccgcc tggtgtgggc cacttcctag cttctcggct gtccatgaag cagcatctgg
     1081 actcgctgtt cgacaaccac tcctgggcgc tgatgaccca gaactccagc ccaccctggc
     1141 ccgaggagct cgacccccag cacctttggt gggaatggta ccacccgcgg ttcaccatct
     1201 ttgggaccct tgccttcttc ctggttatga agttctggat gctgattctg gccaccacca
     1261 tccccatgcc tgccgggtac ttcatgccca tctttatcct tggagctgcc atcgggcgcc
     1321 tcttgggaga ggctcttgcc gtcgccttcc ctgagggcat tgtgactgga ggggttacca
     1381 atcccatcat gcccgggggg tatgctctgg caggggctgc agccttctca ggggctgtga
     1441 cccacaccat ctccacggcg ctgctggcct ttgagctgac cggccagata gtgcatgcac
     1501 tgcccgtgct gatggcggtg ctggcagcca acgccattgc acagagctgc cagccctcct
     1561 tctatgatgg caccatcatt gtcaagaagc tgccatacct gccacggatt ctgggccgca
     1621 acatcggctc ccaccatgtg agggtggagc acttcatgaa ccacagcatc accacactgg
     1681 ccaaggacac gccgctggag gaggtggtca aggttgtgac ctccacagac gtgaccgagt
     1741 atcccctggt ggagagcaca gagtcccaga tcctggtagg catcgtgcag agggcccagc
     1801 tggtgcaggc cctccaggct gagcctcctt ccagggctcc aggacaccag cagtgtctcc
     1861 aggacatctt ggccaggggc tgccccacgg aaccagtgac cctgacgcta ttctcagaga
     1921 ccaccttgca ccaggcacaa aacctcttta agctgttgaa ccttcagtcc ctcttcgtga
     1981 catcgcgggg cagagctgtg ggctgcgtgt cctgggtgga gatgaagaaa gcaatttcca
     2041 acctgacaaa tccgccagct ccaaagtgag ccggcccagc aagatgaaac agggcacccc
     2101 agctgacctg gtactgaggt tgggctgaga ccctgcttct cttcccccat caccacctgc
     2161 ccctccctcc agcccagctc cattctttgg cataacaggc aactctaacc tagcccagaa
     2221 gaggatggct catcctgggt gggacgatgg ctcctgcctt gaaagacaaa aatcccacct
     2281 tgggcagagc tgagtgtgag aagatggaaa accagtatct gccaggtgct cagtgactgg
     2341 ccatcacatt aatgaatgac gagattggag tacactgtca ccaagggcag gcaaagatgc
     2401 cctctggggt tgtctggttc ccagtgagag gctcctgaga aaaataaagc tggttcccag
     2461 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2521 aaaaaaaaaa aaa
//