LOCUS BC048282 2533 bp mRNA linear HUM 01-SEP-2006 DEFINITION Homo sapiens chloride channel Ka, mRNA (cDNA clone MGC:51919 IMAGE:5184165), complete cds. ACCESSION BC048282 VERSION BC048282.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2533) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2533) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (07-MAR-2003) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 93 Row: h Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31542310. FEATURES Location/Qualifiers source 1..2533 /db_xref="H-InvDB:HIT000053314" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:51919 IMAGE:5184165" /tissue_type="Colon, Kidney, Stomach, adult, whole pooled" /clone_lib="NIH_MGC_116" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2533 /gene="CLCNKA" /gene_synonym="ClC-K1" /gene_synonym="CLCK1" /gene_synonym="hClC-Ka" /gene_synonym="MGC61490" /db_xref="GeneID:1187" /db_xref="HGNC:HGNC:2026" /db_xref="MIM:602024" CDS 6..2069 /gene="CLCNKA" /gene_synonym="ClC-K1" /gene_synonym="CLCK1" /gene_synonym="hClC-Ka" /gene_synonym="MGC61490" /codon_start=1 /product="chloride channel Ka" /protein_id="AAH48282.1" /db_xref="GeneID:1187" /db_xref="HGNC:HGNC:2026" /db_xref="MIM:602024" /translation="MEELVGLREGFSGDPVTLQELWGPCPHIRRAIQGGLEWLKQKVF RLGEDWYFLMTLGVLMALVSYAINFAIGCVVRAHQWLYREIGDSHLLRYLSWTVYPVA LVSFSSGFSQSITPSSGGSGIPELKTMLAGVILEDYLDIKNFGAKVVGLSCTLATGST LFLGKVGPFVHLSVMIAAYLGRVRTTTIGEPENKSKQNEMLVAAAAVGVATVFAAPFS GVLFSIEVMSSHFSVRDYWRGFFAATCGAFIFRLLAVFNSEQETITSLYKTSFRVDVP FDLPEIFFFVALGGICGVLSCAYLFCQRTFLSFIKTNRFSSKLLATSKPVYSALATLL LASITYPPGVGHFLASRLSMKQHLDSLFDNHSWALMTQNSSPPWPEELDPQHLWWEWY HPRFTIFGTLAFFLVMKFWMLILATTIPMPAGYFMPIFILGAAIGRLLGEALAVAFPE GIVTGGVTNPIMPGGYALAGAAAFSGAVTHTISTALLAFELTGQIVHALPVLMAVLAA NAIAQSCQPSFYDGTIIVKKLPYLPRILGRNIGSHHVRVEHFMNHSITTLAKDTPLEE VVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILAR GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMKKAISNLTN PPAPK" BASE COUNT 540 a 764 c 689 g 540 t ORIGIN 1 gcctgatgga ggagttggtg gggctgcgtg agggcttctc aggggaccct gtgactctgc 61 aggagctgtg gggcccctgt ccccacatcc gccgagccat ccaaggtggc ctggagtggc 121 taaagcagaa ggtgttccgc ctgggagaag actggtactt cctgatgacc ctcggggtgc 181 tcatggccct ggtcagctat gccataaact ttgccatcgg gtgtgtggtc cgagcacacc 241 agtggctgta cagggagatt ggggacagcc acctgctccg gtatctttcc tggactgtgt 301 accctgtggc cctcgtctct ttctcctcag gcttctccca gagcatcacg ccctcctctg 361 gaggttctgg aatcccggag ctgaagacca tgttggcggg tgtgatcttg gaggactacc 421 tggatatcaa gaactttggg gccaaggtgg tgggcctctc ctgcaccctg gccaccggca 481 gcaccctgtt cctgggcaaa gtgggccctt tcgtgcacct gtctgtaatg atcgctgcct 541 acctgggccg tgtgcgcacc acgaccatcg gggagcctga gaacaagagc aagcaaaacg 601 aaatgctggt ggcagcggcg gcagtgggcg tggccacagt ctttgcagct cccttcagcg 661 gcgtcctgtt cagcatcgag gtcatgtctt cccacttctc tgtccgggat tactggaggg 721 gcttctttgc ggccacctgc ggggccttca tattccggct cctggcagtc ttcaacagcg 781 agcaggagac catcacctcc ctctacaaga ccagtttccg ggtggacgtt cccttcgacc 841 tgcctgagat cttctttttt gtggcgctgg gtggcatctg cggcgtcctg agctgtgctt 901 acctcttctg tcagcgaacc ttcctcagct tcatcaagac caatcggttc agctccaaac 961 tgctggctac tagcaagcct gtgtactccg ctctggccac cttgcttctc gcctccatca 1021 cctacccgcc tggtgtgggc cacttcctag cttctcggct gtccatgaag cagcatctgg 1081 actcgctgtt cgacaaccac tcctgggcgc tgatgaccca gaactccagc ccaccctggc 1141 ccgaggagct cgacccccag cacctttggt gggaatggta ccacccgcgg ttcaccatct 1201 ttgggaccct tgccttcttc ctggttatga agttctggat gctgattctg gccaccacca 1261 tccccatgcc tgccgggtac ttcatgccca tctttatcct tggagctgcc atcgggcgcc 1321 tcttgggaga ggctcttgcc gtcgccttcc ctgagggcat tgtgactgga ggggttacca 1381 atcccatcat gcccgggggg tatgctctgg caggggctgc agccttctca ggggctgtga 1441 cccacaccat ctccacggcg ctgctggcct ttgagctgac cggccagata gtgcatgcac 1501 tgcccgtgct gatggcggtg ctggcagcca acgccattgc acagagctgc cagccctcct 1561 tctatgatgg caccatcatt gtcaagaagc tgccatacct gccacggatt ctgggccgca 1621 acatcggctc ccaccatgtg agggtggagc acttcatgaa ccacagcatc accacactgg 1681 ccaaggacac gccgctggag gaggtggtca aggttgtgac ctccacagac gtgaccgagt 1741 atcccctggt ggagagcaca gagtcccaga tcctggtagg catcgtgcag agggcccagc 1801 tggtgcaggc cctccaggct gagcctcctt ccagggctcc aggacaccag cagtgtctcc 1861 aggacatctt ggccaggggc tgccccacgg aaccagtgac cctgacgcta ttctcagaga 1921 ccaccttgca ccaggcacaa aacctcttta agctgttgaa ccttcagtcc ctcttcgtga 1981 catcgcgggg cagagctgtg ggctgcgtgt cctgggtgga gatgaagaaa gcaatttcca 2041 acctgacaaa tccgccagct ccaaagtgag ccggcccagc aagatgaaac agggcacccc 2101 agctgacctg gtactgaggt tgggctgaga ccctgcttct cttcccccat caccacctgc 2161 ccctccctcc agcccagctc cattctttgg cataacaggc aactctaacc tagcccagaa 2221 gaggatggct catcctgggt gggacgatgg ctcctgcctt gaaagacaaa aatcccacct 2281 tgggcagagc tgagtgtgag aagatggaaa accagtatct gccaggtgct cagtgactgg 2341 ccatcacatt aatgaatgac gagattggag tacactgtca ccaagggcag gcaaagatgc 2401 cctctggggt tgtctggttc ccagtgagag gctcctgaga aaaataaagc tggttcccag 2461 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2521 aaaaaaaaaa aaa //