LOCUS BC041164 2266 bp mRNA linear HUM 09-JUN-2008 DEFINITION Homo sapiens sphingomyelin phosphodiesterase 1, acid lysosomal, mRNA (cDNA clone MGC:48856 IMAGE:5762229), complete cds. ACCESSION BC041164 VERSION BC041164.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2266) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2266) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (16-DEC-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 84 Row: m Column: 5 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 56117839. FEATURES Location/Qualifiers source 1..2266 /db_xref="H-InvDB:HIT000052529" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:48856 IMAGE:5762229" /tissue_type="Lung, Spleen, fetal, pooled" /clone_lib="NIH_MGC_122" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2266 /gene="SMPD1" /gene_synonym="ASM" /gene_synonym="NPD" /db_xref="GeneID:6609" /db_xref="HGNC:HGNC:11120" /db_xref="MIM:607608" CDS 97..1191 /gene="SMPD1" /gene_synonym="ASM" /gene_synonym="NPD" /codon_start=1 /product="SMPD1 protein" /protein_id="AAH41164.1" /db_xref="GeneID:6609" /db_xref="HGNC:HGNC:11120" /db_xref="MIM:607608" /translation="MPRYGASLRQSCPRSGREQGQDGTAGAPGLLWMGLALALALALA LALSDSRVLWAPAEAHPLSPQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLG LKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLL LGSTCGHWDIFSSWNISLPTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTD PDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPAGPFDMVYWT GDIPAHDVWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEG NHSSRWLYEAMAKAWEPWLPAEALRTLRCI" BASE COUNT 484 a 702 c 631 g 449 t ORIGIN 1 ggtgtccccg gcgccgcccg gggccctgag ggctggctag ggtccaggcc gggggggacg 61 ggacagacga accagccccg tgtaggaagc gcgacaatgc cccgctacgg agcgtcactc 121 cgccagagct gccccaggtc cggccgggag cagggacaag acgggaccgc cggagccccc 181 ggactccttt ggatgggcct ggcgctggcg ctggcgctgg cgctggcgct ggctctgtct 241 gactctcggg ttctctgggc tccggcagag gctcaccctc tttctcccca aggccatcct 301 gccaggttac atcgcatagt gccccggctc cgagatgtct ttgggtgggg gaacctcacc 361 tgcccaatct gcaaaggtct attcaccgcc atcaacctcg ggctgaagaa ggaacccaat 421 gtggctcgcg tgggctccgt ggccatcaag ctgtgcaatc tgctgaagat agcaccacct 481 gccgtgtgcc aatccattgt ccacctcttt gaggatgaca tggtggaggt gtggagacgc 541 tcagtgctga gcccatctga ggcctgtggc ctgctcctgg gctccacctg tgggcactgg 601 gacattttct catcttggaa catctctttg cctactgtgc cgaagccgcc ccccaaaccc 661 cctagccccc cagccccagg tgcccctgtc agccgcatcc tcttcctcac tgacctgcac 721 tgggatcatg actacctgga gggcacggac cctgactgtg cagacccact gtgctgccgc 781 cggggttctg gcctgccgcc cgcatcccgg ccaggtgccg gatactgggg cgaatacagc 841 aagtgtgacc tgcccctgag gaccctggag agcctgttga gtgggctggg cccagccggc 901 ccttttgata tggtgtactg gacaggagac atccccgcac atgatgtctg gcaccagact 961 cgtcaggacc aactgcgggc cctgaccacc gtcacagcac ttgtgaggaa gttcctgggg 1021 ccagtgccag tgtaccctgc tgtgggtaac catgaaagca cacctgtcaa tagcttccct 1081 ccccccttca ttgagggcaa ccactcctcc cgctggctct atgaagcgat ggccaaggct 1141 tgggagccct ggctgcctgc cgaagccctg cgcaccctca ggtgcatata attggccaca 1201 ttcccccagg gcactgtctg aagagctgga gctggaatta ttaccgaatt gtagccaggt 1261 atgagaacac cctggctgct cagttctttg gccacactca tgtggatgaa tttgaggtct 1321 tctatgatga agagactctg agccggccgc tggctgtagc cttcctggca cccagtgcaa 1381 ctacctacat cggccttaat cctggttacc gtgtgtacca aatagatgga aactactccg 1441 ggagctctca cgtggtcctg gaccatgaga cctacatcct gaatctgacc caggcaaaca 1501 taccgggagc cataccgcac tggcagcttc tctacagggc tcgagaaacc tatgggctgc 1561 ccaacacact gcctaccgcc tggcacaacc tggtatatcg catgcggggc gacatgcaac 1621 ttttccagac cttctggttt ctctaccata agggccaccc accctcggag ccctgtggca 1681 cgccctgccg tctggctact ctttgtgccc agctctctgc ccgtgctgac agccctgctc 1741 tgtgccgcca cctgatgcca gatgggagcc tcccagaggc ccagagcctg tggccaaggc 1801 cactgttttg ctagggcccc agggcccaca tttgggaaag ttcttgatgt aggaaagggt 1861 gaaaaagccc aaatgctgct gtggttcaac caggcaagat catccggtga aagaaccagt 1921 ccctgggccc caaggatgcc ggggaaacag gaccttctcc tttcctggag ctggtttagc 1981 tggatatggg agggggtttg gctgcctgtg cccaggagct agactgcctt gaggctgctg 2041 tcctttcaca gccatggagt agaggcctaa gttgacactg ccctgggcag acaagacagg 2101 agctgtcgcc ccaggcctgt gctgcccagc caggaaccct gtactgctgc tgcgacctga 2161 tgctgccagt ctgttaaaat aaagataaga gacttggact ccaaaaaaaa aaaaaaaaaa 2221 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa //