LOCUS BC040187 4823 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens HECT domain containing 2, mRNA (cDNA clone MGC:42202 IMAGE:4811444), complete cds. ACCESSION BC040187 VERSION BC040187.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4823) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4823) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 70 Row: k Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 27735098. FEATURES Location/Qualifiers source 1..4823 /db_xref="H-InvDB:HIT000096052" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:42202 IMAGE:4811444" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4823 /gene="HECTD2" /db_xref="GeneID:143279" /db_xref="HGNC:HGNC:26736" CDS 98..2428 /gene="HECTD2" /codon_start=1 /product="HECT domain containing 2" /protein_id="AAH40187.1" /db_xref="GeneID:143279" /db_xref="HGNC:HGNC:26736" /translation="MSEAVRVPSPATPLVVAAAAPEERKGKESEREKLPPIVSAGAGA TAGLDRGAKGQISTFSSFISAVSPKKEAAENRSSPAHLVFLNIKNVREPPPICLDVRQ KQRTSMDASSSEMKAPVLPEPILPIQPKTVKDFQEDVEKVKSSGDWKAVHDFYLTTFD SFPELNAAFKKDATASFNTIEDSGINAKFVNAVYDTLLNTPQDVQKTVLKGIINSLLR EWKGPRTKDDLRAYFILLQNPQFNNTSTYVIYAHLLRQIATLVEADHHFLVHWFKKLS QKRFKQLVERLLQFISLRLFPAKPEEFPPITKCSWWIPSAAKVLALLNTANNLVHPPL IPYTDFYNSTLDHIDLMEEYHTWQNFGNSHRFSFCQYPFVISVAAKKIIIQRDSEQQM INIARQSLVDKVSRRQRPDMNILFLNMKVRRTHLVSDSLDELTRKRADLKKKLKVTFV GEAGLDMGGLTKEWFLLLIRQIFHPDYGMFTYHKDSHCHWFSSFKCDNYSEFRLVGIL MGLAVYNSITFDIRFPPCCYKKLLSPPIIPSGQNIPVGICNVTVDDLCQIMPELAHGL SELLSHEGNVEEDFYSTFQVFQEEFGIIKSYNLKPGGDKISVTNQNRKEYVQLYTDFL LNKSIYKQFAAFYYGFHSVCASNALMLLRPEEVEILVCGSPDLDMHALQRSTQYDGYA KTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADLNFKISKNETSTNCLPV AHTCFNQLCLPPYKSKKDLKQKLIIGISNSEGFGLE" BASE COUNT 1527 a 887 c 871 g 1538 t ORIGIN 1 agcgagtcct ctcgcggccg cggcggcagc agcagcgcca gccccagcaa cactgaggcc 61 gccgccgccg cctggcgctc ccgccgcccg gcccgacatg agtgaggcgg ttcgggtacc 121 ctcgcccgcc actccgctgg tggtggcggc ggccgcgcct gaggagagga aagggaagga 181 gtcagagcgc gagaagctgc cgcccatcgt atcggcgggc gccggcgcga ccgcgggttt 241 ggacagagga gccaaaggcc aaatttccac tttcagcagt tttatttcag ctgttagccc 301 gaagaaagaa gctgctgaaa acagaagttc acctgcacat cttgttttcc ttaacatcaa 361 gaatgtgaga gaaccaccac caatttgcct tgatgttaga caaaaacagc gtacatctat 421 ggatgcatca tcatccgaaa tgaaggcccc agtccttcca gaacctattc ttcctatcca 481 gcccaaaact gtgaaagact ttcaggaaga tgtagaaaaa gttaagtcat caggagattg 541 gaaagcagta catgattttt atctaacaac gtttgattct ttcccagaat taaatgctgc 601 atttaagaaa gatgccactg cctcatttaa caccattgaa gactctggga ttaatgctaa 661 atttgtgaat gctgtgtatg ataccttact taatactcct caagacgttc agaagacagt 721 attaaaggga atcattaaca gcctgttacg agaatggaaa ggtccacgaa caaaagatga 781 tcttagagca tattttatac ttttacagaa tcctcagttt aataacacat ctacgtatgt 841 catctatgct cacttgctac gacagatagc taccttagtg gaagctgacc atcatttcct 901 agttcactgg tttaaaaaat tgtcccagaa gaggttcaaa caattggtag agagattgct 961 gcaatttatt tctttacgcc tgtttcctgc aaagcctgaa gaatttccac ctataacaaa 1021 gtgttcctgg tggattccat cagccgctaa agtgttggct ttacttaata ctgcaaacaa 1081 tttagttcac cctcccctta ttccttatac tgatttctat aattctacat tggatcacat 1141 tgatctcatg gaagaatatc atacttggca aaactttgga aactctcaca ggttttcctt 1201 ctgtcagtac ccattcgtta tttctgtagc tgcaaaaaaa atcattattc agagagactc 1261 agagcaacag atgataaaca tcgcaaggca aagtctggtg gataaagtat ctcgaagaca 1321 gagacctgat atgaatatat tatttctaaa tatgaaagta agacggacac atctggttag 1381 cgattcactt gatgagctaa cccggaaaag agccgatttg aaaaagaagt taaaagttac 1441 atttgtaggg gaagctggtt tggatatggg tggtttgact aaagaatggt tccttcttct 1501 aattcgccaa atttttcatc cagattatgg catgtttaca tatcacaagg attcacactg 1561 ccattggttt agcagcttta aatgtgataa ctattctgaa ttccgattgg ttggaattct 1621 tatgggacta gctgtttata acagcatcac cttcgatatt cgtttccctc cctgctgtta 1681 caagaaatta ttgagccctc ccatcattcc tagtggtcaa aatataccag taggcatctg 1741 caatgttacc gtggacgact tatgtcaaat tatgcctgag ttggcccatg gattaagtga 1801 actcttatca catgaaggca atgttgaaga agatttctat tcaacatttc aggtttttca 1861 agaagaattt ggaataatca agtcctataa tttaaagccc ggtggtgata aaatttcagt 1921 taccaatcaa aatagaaaag aatatgtaca gctttatact gacttccttc tgaacaaatc 1981 catctataag cagtttgctg cattttatta tggatttcat agtgtgtgtg cttcaaatgc 2041 cctaatgctg cttcgtccag aagaggttga aattttggtc tgtggaagtc ctgacctgga 2101 tatgcatgct ctgcagagaa gtactcagta tgatggctat gcaaaaacgg acttaactat 2161 aaaatacttt tgggatgttg tgcttggatt tcctcttgat cttcaaaaga agttgctaca 2221 ttttactaca gggagtgaca gagtacctgt aggagggatg gctgatttga actttaaaat 2281 ctcaaagaat gaaacttcta ctaactgctt acctgtggcc catacctgct tcaatcaact 2341 ttgccttccc ccctacaaga gcaaaaagga tctgaaacag aaattgatca ttggaatttc 2401 aaattcagaa ggttttggac ttgagtaacc tagaagactt gaaatataat cttttatatg 2461 tagcattcac ttccctctta ctgtgccttt agccttttca tgtttctgtc tcaaaacact 2521 ttgacaaagc tcaccaactt taaaatatta agtttttaaa aaatcaaata tgaagtatgt 2581 tcagcaaagg cataattttc taaaaacaca cacagaaatc gcttgagtga ggaaaagtcc 2641 acatggcaga gacaggtatg gtccagttcc tcttttatat agcactttat cattctccac 2701 aagtagtttg tcacaggcat tccactggga aagcaaagta cagtgaagaa tgaatttatg 2761 gtatagttga acccagtggc agattgtaca ctgctagcac tgctagcaca cagtagcaaa 2821 gcaaacagct acattatctt taacataagg catgtagcca tattttcata tagtggtata 2881 caacacagta tcattgcaaa tgcagtttac agggattttt gatatactgg cttgggacct 2941 ataagattct tctcagcagt tgctgaaaag catgtaaata actacataat agcctgagaa 3001 taatgggatt ttgatagtgc catttattgt taaagattta tttttacaaa gtaaattcag 3061 ggttttagat gtgtacacag cttttacaaa tcaataaaga tgattgtaca agagtatttt 3121 cagactaatt ggattcaagg ttatattctt ttaagtgttg ttagtctgca tgcacattgg 3181 cagtaaacta gttacttgtg tactctgtaa tatttgtata atgatcattt cttcttaagg 3241 ctcaagatat tagaaaagaa atcagaccta aataatcatt gatgaagtat gtcagttaca 3301 agcacaaaag aatataactg cttttataaa tcttttgaat catgtacaag acttatatct 3361 acattttttg atcaccagtt gtaccaaaac actaattttt gaaaaagata ggttaaagta 3421 tttgacaaaa gtgaatacaa taataacact tgtgtcaaaa tgatatagct tagtataaaa 3481 ataaaattca acgttttggc caaaatgttt gtttttcact ggattctgaa tataataaat 3541 tcaaagtacc ctttttttag agtttctaat aaagtagtat gtaaaaagaa actgcatttt 3601 aagtcagaca gtaaatgttt tttttaattt acagcaaatg aagcagtttt attagcatgt 3661 tacaaatatt gccaaaccaa gacttctcta ccatacttta acagctttcc ttcagaaaac 3721 tctgaagtta tatttgcaat aataatgaaa ccagcattta gtaccagcat atggttcata 3781 tgcaaataat actttcccca aaatctttct gggctaggct attttcttgc tatgcttcct 3841 gcacccaacc agcagaattc ttccagggtg gaggaactaa tcagcttgtt ctccaacagt 3901 tctgaagcca acccacaaat ctttgaggaa aaggggtcac tttgtttact attctcttgg 3961 agatggaagt gattctgctc ttccatttgg gtatattatt tcaagggtat ttcttcttaa 4021 aaatcttgga aagcctaaga gagttaaagg catcctggtt ttgtttcatt ttgctctgtt 4081 ttaaatccat atgcaaataa aactgcttct ctcttacact gcttgaacta gaaaatcagc 4141 tttttaatgt aggttaccac ttataagcac aaaagaaaca tgtataagaa accagattta 4201 agtgttttaa ataaaatgta aacagttttt atttggtaga gatgactcat ggaaaaattg 4261 tgttggcttg gtctgcatgt ttaatgatgt gcttgtatat cgattagctg tgtcactttt 4321 aaataagaag tccacacaag caagccaaat ttttagatga cgaagtccat aaataactag 4381 agaatttttg ttatctgttg ttaagttgaa atgtataatc atttatcact aaattgcaca 4441 ttgcctttat ttatttgtgc tctgtttttg gtttacagtg taataatacc tcatttaaaa 4501 aataaaaacc actactgtta cattttatta atttaaaaag ctagaaaatt catgtagtta 4561 ctttttttac atatataatc tgttaatgaa ttattgattt ttgtatctgc cacagtaaat 4621 taaagcatta cacagtattt atcagtattt tttaaacatc ctgtcctttt ttaaaatctt 4681 tgcttagtca gtcatatttt tgtctgtatg attagaagtt tttacgtcct tccttttttg 4741 tacaaatctg tattgtatta atttctggat gcaatttttc aaatattaaa attatacagt 4801 cagtcagaaa aaaaaaaaaa aaa //