LOCUS BC039574 2238 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens vacuolar protein sorting 4 homolog B (S. cerevisiae), mRNA (cDNA clone MGC:48692 IMAGE:6042862), complete cds. ACCESSION BC039574 VERSION BC039574.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2238) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2238) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-NOV-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 84 Row: n Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 17865801. FEATURES Location/Qualifiers source 1..2238 /db_xref="H-InvDB:HIT000052208" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:48692 IMAGE:6042862" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2238 /gene="VPS4B" /gene_synonym="MIG1" /gene_synonym="VPS4-2" /db_xref="GeneID:9525" /db_xref="HGNC:HGNC:10895" /db_xref="MIM:609983" CDS 168..1502 /gene="VPS4B" /gene_synonym="MIG1" /gene_synonym="VPS4-2" /codon_start=1 /product="vacuolar protein sorting 4 homolog B (S. cerevisiae)" /protein_id="AAH39574.1" /db_xref="GeneID:9525" /db_xref="HGNC:HGNC:10895" /db_xref="MIM:609983" /translation="MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV VKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADEKGNDS DGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKN LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG ATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTD GYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAI EMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG" BASE COUNT 710 a 420 c 492 g 616 t ORIGIN 1 ggagagagtg ttgtctaaaa caagttccgg aagggaggct gcccttcgcg gtccgagaac 61 caccggcctc cccagtttga gggctgttac cccgtgcgcg cttcgacgtt gctgctgttg 121 gctctcctcg cccctcgttc ccttgggaac cgcctgggaa ctccgccatg tcatccactt 181 cgcccaacct ccagaaagcg atagatctgg ctagcaaagc agcgcaagaa gacaaggctg 241 ggaactacga agaagccctt cagctctatc agcatgctgt gcagtatttt cttcatgtcg 301 ttaaatatga agcacagggt gataaagcca agcaaagtat cagggcaaag tgtacagaat 361 atcttgatag agcagaaaaa ctaaaggagt acctgaaaaa taaagagaaa aaagcacaga 421 agccagtgaa agaaggacag ccgagtccag cagatgagaa ggggaatgac agtgatgggg 481 aaggagaatc tgatgatcct gaaaaaaaga aactacagaa tcaacttcaa ggtgccattg 541 ttatagaacg accaaatgtg aaatggagtg acgttgctgg acttgaagga gccaaagaag 601 cactgaaaga ggctgtgata ctgcctatta aatttcctca tctttttaca ggcaagagaa 661 caccttggag gggaatccta ttatttgggc cgcctggaac aggaaagtcc tacttagcca 721 aagctgtagc aacagaagcc aacaactcaa catttttttc aatatcttcc tctgatcttg 781 tttctaagtg gctaggtgaa agtgaaaaac tggttaagaa tttattccaa cttgccagag 841 agaacaagcc ctccattatc ttcattgatg aaattgattc tctctgtggt tcaagaagtg 901 aaaatgaaag tgaagccgca cgtagaatta agacggagtt cctagtgcaa atgcaagggg 961 ttggtgtaga caatgatgga attttggttc tgggagctac aaatataccc tgggttctgg 1021 attctgccat taggcgaaga tttgagaaac gaatttatat tcccttgccg gaaccccatg 1081 cccgagcagc aatgtttaaa ctgcacctag ggaccactca gaacagtctc acggaagcag 1141 actttcggga acttgggagg aaaacagatg gttattcagg ggcagatata agtatcattg 1201 tacgtgatgc ccttatgcag cctgttagga aagtacagtc agctactcat tttaaaaagg 1261 ttcgcggacc ttcccgagct gatcctaacc atcttgtaga tgatctgcta acaccttgct 1321 ctccaggtga ccctggtgcc attgaaatga catggatgga tgtccctgga gataaacttt 1381 tggagccagt tgtttccatg tcggatatgt tgcggtcact atctaacaca aaacctacag 1441 tcaatgaaca tgacttgttg aaattaaaga agtttacaga agattttggt caagaaggct 1501 aagccaaaga caaggaagat gcttaccata tgtattcttt ctttcataga tatttttgtc 1561 tatttggatc gcattaattg tttccagtaa aactctttta ccacagggaa atacacatct 1621 cacttcagag ttccattagg ttttatattg tacttttcct ccattactta ttaaatactc 1681 ctattaacaa aaggtacaaa ataacaggtt atgaggaaat gagcgatata tgaacggcat 1741 aaaaacagaa attacccagt aaaaaggatg tcagaaattg acatacaaat atttacaatt 1801 tttatgaatg gtggtctttg caaagagcat ttatattttc tttttttttt actaaaatga 1861 tatagggttt attttatatt ttcaaaaaaa ttgttaaaca tcattcttat caatgtaaaa 1921 tttacgttat taaaaaatta caaatgatag aatctttact cagggatggg caataaaaca 1981 gcaaagagct ttgtgattgg gtttgaaaga ttttgaatta tagacagtgc tcttaatagt 2041 ttttaataag ttgatatttt tttctgtgta gatttaaata atttctttaa aagcgtaagc 2101 tttggctggg catggtggct tatgcctgta atcccagcac tttgggaggc tacgatgggt 2161 ggatcacctg aggtcaggag ttcaagacca gtctggccaa catggtgaaa tgccgtctct 2221 actaaaaaaa aaaaaaaa //