LOCUS BC038851 1930 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens C-type lectin domain family 4, member M, mRNA (cDNA
clone MGC:47866 IMAGE:5166966), complete cds.
ACCESSION BC038851
VERSION BC038851.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1930)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1930)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 82 Row: c Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47607500.
FEATURES Location/Qualifiers
source 1..1930
/db_xref="H-InvDB:HIT000052082"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:47866 IMAGE:5166966"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1930
/gene="CLEC4M"
/gene_synonym="DC-SIGN2"
/gene_synonym="DC-SIGNR"
/gene_synonym="DCSIGNR"
/gene_synonym="HP10347"
/gene_synonym="LSIGN"
/gene_synonym="MGC47866"
/db_xref="GeneID:10332"
/db_xref="HGNC:HGNC:13523"
/db_xref="MIM:605872"
CDS 73..1272
/gene="CLEC4M"
/gene_synonym="DC-SIGN2"
/gene_synonym="DC-SIGNR"
/gene_synonym="DCSIGNR"
/gene_synonym="HP10347"
/gene_synonym="LSIGN"
/gene_synonym="MGC47866"
/codon_start=1
/product="C-type lectin domain family 4, member M"
/protein_id="AAH38851.1"
/db_xref="GeneID:10332"
/db_xref="HGNC:HGNC:13523"
/db_xref="MIM:605872"
/translation="MSDSKEPRVQQLGLLEEDPTTSGIRLFPRDFQFQQIHGHKSSTG
CLGHGALVLQLLSFMLLAGVLVAILVQVSKVPSSLSQEQSEQDAIYQNLTQLKAAVGE
LSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ
ELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGEL
PEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELTDLKTAFERLCRHCPKDWTFFQ
GNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSWMGLSDLN
QEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCAEFSGSGWNDNRCDVDNYWICKKP
AACFRDE"
BASE COUNT 501 a 492 c 501 g 436 t
ORIGIN
1 tgaggatcag agggtggaaa ataaaagctg tggtccccag gagtcctgaa catctgggga
61 cagcgggaaa acatgagtga ctccaaggaa ccaagggtgc agcagctggg cctcctggaa
121 gaagatccaa caaccagtgg catcagactt tttccaagag actttcaatt ccagcagata
181 catggccaca agagctctac agggtgtctt ggccatggcg ccctggtgct gcaactcctc
241 tccttcatgc tcttggctgg ggtcctggtg gccatccttg tccaagtgtc caaggtcccc
301 agctccctaa gtcaggaaca atccgagcaa gacgcaatct accagaacct gacccagctt
361 aaagctgcag tgggtgagct ctcagagaaa tccaagctgc aggagatcta ccaggagctg
421 acccagctga aggctgcagt gggtgagttg ccagagaaat ccaagctgca ggagatctac
481 caggagctga cccggctgaa ggctgcagtg ggtgagttgc cagagaaatc caagctgcag
541 gagatctacc aggagctgac ccggctgaag gctgcagtgg gtgagttgcc agagaaatcc
601 aagctgcagg agatctacca ggagctgacc cggctgaagg ctgcagtggg tgagttgcca
661 gagaaatcca agctgcagga gatctaccag gagctgacgg agctgaaggc tgcagtgggt
721 gagttgccag agaaatccaa gctgcaggag atctaccagg agctgaccca gctgaaggct
781 gcagtgggtg agttgccaga ccagtccaag cagcagcaaa tctatcaaga actgaccgat
841 ttgaagactg catttgaacg cctgtgccgc cactgtccca aggactggac attcttccaa
901 ggaaactgtt acttcatgtc taactcccag cggaactggc acgactccgt caccgcctgc
961 caggaagtga gggcccagct cgtcgtaatc aaaactgctg aggagcagaa cttcctacag
1021 ctgcagactt ccaggagtaa ccgcttctcc tggatgggac tttcagacct aaatcaggaa
1081 ggcacgtggc aatgggtgga cggctcacct ctgtcaccca gcttccagcg gtactggaac
1141 agtggagaac ccaacaatag cgggaatgaa gactgtgcgg aatttagtgg cagtggctgg
1201 aacgacaatc gatgtgacgt tgacaattac tggatctgca aaaagcccgc agcctgcttc
1261 agagacgaat agttgtttcc ctgctagcct cagcctccat tgtggtatag cagaacttca
1321 cccacttgta agccagcgct tcttctctcc atccttggac cttcacaaat gccctgagac
1381 ggttctctgt tcgatttttc atcccctatg aacctgggtc ttattctgtc cttctgatgc
1441 ctccaagttt ccctggtgta gagcttgtgt tcttggccca tccttggagc tttataagtg
1501 acctgagtgg gatgcattta gggggcgggc ttggtatgtt gtatgaatcc actctctgtt
1561 ccttttggag attagactat ttggattcat gtgtagctgc cctgtcccct ggggctttat
1621 ctcatccatg caaactacca tctgctcaac ttccagctac accccgtgca cccttttgac
1681 tggggacttg ctggttgaag gagctcatct tgcaggctgg aagcaccagg gaattaattc
1741 ccccagtcaa ccaatggcat ccagagaggg catggaggct ccatacaacc tcttccaccc
1801 ccacatcttt ctttgtccta tacatgtctt ccatttggct gtttctgagt tgtagccttt
1861 ataataaagt ggtaaatgtt gtaactgcaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1921 aaaaaaaaaa
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