LOCUS BC034479 3460 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens piggyBac transposable element derived 3, mRNA (cDNA
clone MGC:26346 IMAGE:4822982), complete cds.
ACCESSION BC034479
VERSION BC034479.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3460)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3460)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: e Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4557564.
FEATURES Location/Qualifiers
source 1..3460
/db_xref="H-InvDB:HIT000259078"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26346 IMAGE:4822982"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3460
/gene="PGBD3"
/gene_synonym="FLJ90201"
/db_xref="GeneID:267004"
/db_xref="HGNC:HGNC:19400"
CDS 127..3312
/gene="PGBD3"
/gene_synonym="FLJ90201"
/codon_start=1
/product="PGBD3 protein"
/protein_id="AAH34479.1"
/db_xref="GeneID:267004"
/db_xref="HGNC:HGNC:19400"
/translation="MPNEGIPHSSQTQEQDCLQSQPVSNNEEMAIKQESGGDGEVEEY
LSFRSVGDGLSTSAVGCASAAPRRGPALLHIDRHQIQAVEPSAQALELQGLGVDVYDQ
DVLEQGVLQQVDNAIHEASRASQLVDVEKEYRSVLDDLTSCTTSLRQINKIIEQLSPQ
AATSRDINRKLDSVKRQKYNKEQQLKKITAKQKHLQAILGGAEVKIELDHASLEEDAE
PGPSSLGSMLMPVQETAWEELIRTGQMTPFGTQIPQKQEKKPRKIMLNEASGFEKYLA
DQAKLSFERKKQGCNKRAARKAPAPVTPPAPVQNKNKPNKKARVLSKKEERLKKHIKK
LQKRALQFQGKAGLPKARRPWESDMRPEAEGDSEGEESEYFPTEEEEEEEDDEVEGAE
ADLSGDGTDYELKPLPKGGKRQKKVPVQEIDDDFFPSSGEEAEAASVGEGGGGGRKVG
RYRDDGDEDYYKQRLSPKMPRTLSLHEITDLLETDDSIEASAIVIQPPENATAPVSDE
ESGDEEGGTINNLPGSLLHTAAYLIQDGSDAESDSDDPSYAPKDDSPDEVPSTFTVQQ
PPPSRRRKMTKILCKWKKADLTVQPVAGRVTAPPNDFFTVMRTPTEILELFLDDEVIE
LIVKYSNLYACSKGVHLGLTSSEFKCFLGIIFLSGYVSVPRRRMFWEQRTDVHNVLVS
AAMRRDRFETIFSNLHVADNANLDPVDKFSKLRPLISKLNERCMKFVPNETYFSFDEF
MVPYFGRHGCKQFIRGKPIRFGYKFWCGATCLGYICWFQPYQGKNPNTKHEEYGVGAS
LVLQFSEALTEAHPGQYHFVFNNFFTSIALLDKLSSMGHQATGTVRKDHIDKVPLESD
VALKKKERGTFDYRIDGKGNIVCRWNDNSVVTVASSGAGIHPLCLVSRYSQKLKKKIQ
VQQPNMIKVYNQFMGGVDRADENIDKYRASIRGKKWYSSPLLFCFELVLQNAWQLHKT
YDEKPVDFLEFRRRVVCHYLETHGHPPEPGQKGRPQKRNIDSRYDGINHVIVKQGKQT
RCAECHKNTTFRCEKCDVALHVKCSVEYHTE"
BASE COUNT 1070 a 704 c 869 g 817 t
ORIGIN
1 agcggaggtg cgcgcgtggc ggagggggaa cagagaagca ggacagctct ccatccttcc
61 cgtgttcagt cgtgggagac aacaagagag gtcacagcct ggcgaccaaa aagtagtctg
121 tagagaatgc caaatgaggg aatcccccac tcaagtcaaa ctcaggagca agactgttta
181 cagagtcaac ctgtcagtaa taatgaagaa atggcaatca agcaagaaag tggtggtgat
241 ggggaggtgg aggagtacct gtcctttcgt tctgtgggtg acgggctgtc cacctctgct
301 gtggggtgcg catcagcagc tccgaggaga gggccagccc tgctgcacat cgaccgacat
361 cagatccagg cagtagagcc tagcgcccag gcccttgagc tgcagggttt gggtgtggac
421 gtctatgacc aggacgtgct ggaacaggga gtgcttcagc aggtggacaa tgccatccat
481 gaggccagcc gtgcctccca gctcgttgac gtggagaagg agtatcggtc ggtcctggat
541 gacctcacgt catgtacgac atccctaagg caaatcaata aaattattga acagcttagc
601 cctcaagctg ccaccagcag agacatcaac aggaaactag attctgtaaa acgacagaag
661 tataataagg aacaacagct aaaaaagatc actgcaaaac aaaagcatct ccaggccatc
721 cttggaggag cagaggtgaa aattgaacta gatcacgcca gtctggagga ggatgcagag
781 ccggggccat ccagtcttgg cagcatgctc atgcctgtcc aggagactgc ctgggaagag
841 ctcatccgca ctggccagat gacacctttt ggtacccaga tccctcagaa acaggagaaa
901 aagcccagaa aaatcatgct taatgaagca tcaggcttcg aaaagtattt ggcagatcaa
961 gcaaaactgt cttttgaaag gaagaagcaa ggttgtaata aaagagcagc tagaaaagct
1021 ccagccccag tcacgcctcc agccccagtg caaaataaaa acaaaccaaa caagaaagcc
1081 agagttctgt ccaaaaaaga ggagcgtttg aaaaagcaca tcaagaaact ccagaagagg
1141 gctttgcagt tccaggggaa agcgggattg ccaaaggcaa ggagaccttg ggagtcagac
1201 atgaggccag aggcagaggg agactctgag ggtgaagagt ctgagtattt ccccacagag
1261 gaggaggaag aggaggaaga tgacgaggtg gagggggcag aggcggacct gtctggagat
1321 ggtactgact atgagctgaa gcctctgccc aagggcggga aacggcagaa gaaagtgcca
1381 gtgcaggaga ttgatgatga ctttttccca agttctgggg aagaagctga agctgcttct
1441 gtaggagaag gaggaggagg aggtcggaaa gtgggaagat accgagatga tggagatgaa
1501 gattattata agcagcggtt aagtcccaag atgcctcgaa cactaagttt acatgaaata
1561 actgaccttt tagagacaga tgacagcata gaagcaagtg ctatagtgat acaaccacct
1621 gaaaatgcta cagcacctgt ttctgatgag gaatcaggag atgaagaagg tggaacaata
1681 aataatctgc caggttcttt gttgcacaca gctgcgtatc ttattcaaga tggctctgat
1741 gctgagtctg actcagatga tccctcatac gcacctaaag atgactctcc tgatgaagtt
1801 ccatctacgt ttactgtgca gcaacctcca ccatcaagga ggaggaaaat gacaaaaatt
1861 ctttgcaaat ggaaaaaagc cgacctaact gtacaacccg tagcaggtag agttacagca
1921 ccaccaaacg atttcttcac cgtaatgaga actcccacag aaattcttga actttttctt
1981 gatgacgagg tcattgaact cattgtcaag tactccaact tatatgcttg cagtaaaggt
2041 gtacatcttg gcttgactag ctctgaattc aaatgttttc tgggaattat ttttctgagt
2101 ggttatgtct cagttcctag aaggcgtatg ttttgggaac aaagaacaga tgtgcataat
2161 gtactggtta gtgctgccat gagacgtgac cggtttgaaa ctatattttc taatttgcat
2221 gttgctgaca atgcaaattt ggatccagtg gacaaatttt ccaaattgcg acctctcata
2281 agcaaactta atgagagatg catgaaattt gttccaaatg aaacatattt cagctttgat
2341 gaattcatgg ttccttattt tggtcgtcac gggtgcaaac aatttattcg gggaaagccc
2401 attcggtttg gctataagtt ttggtgtggt gccacctgtc tgggctacat ttgctggttt
2461 cagccgtatc agggtaaaaa cccaaatact aaacatgagg aatatggtgt cggtgcgtca
2521 cttgtccttc agtttagtga ggcacttaca gaggcacacc ctggacaata ccattttgta
2581 ttcaataact ttttcaccag tattgcactt cttgataagc tcagttcaat gggacatcag
2641 gcaacaggta cagtgagaaa ggatcacatt gacaaagttc cactggaatc agatgtagct
2701 ttaaagaaaa aagaaagagg cacatttgat tatcgaattg atggcaaagg caatattgtc
2761 tgcagatgga atgataacag tgttgtcact gttgcctcat ctggtgctgg tatccatccc
2821 ctgtgtcttg tcagtcgtta ctcccagaaa ctgaaaaaga agatacaagt tcagcagcca
2881 aacatgatca aagtgtataa ccagttcatg ggaggcgtag acagagctga tgaaaacatt
2941 gataagtatc gggcatcaat ccgtggaaag aaatggtatt caagccctct tttgttctgt
3001 ttcgaattgg tcttacaaaa tgcttggcaa ttgcataaaa catatgatga gaaaccagtg
3061 gattttctgg agtttcgtcg acgtgtggta tgccattatc tggagaccca tggtcatcct
3121 ccagaacctg gccaaaaagg aagacctcag aagcgtaaca ttgactcacg ttatgatggc
3181 ataaatcatg tgatagtcaa acagggaaag caaacgcgat gcgctgaatg tcataagaac
3241 acaacttttc gatgtgaaaa atgtgatgtt gccttacatg tgaagtgttc cgttgaatat
3301 cacactgaat agcaggtgtc accacctcct gagataagaa acatagtttt atacattatg
3361 tacagtgtag cagtggtttt gcctagtgtt ccaattttgg aacgtcacat aacaatggaa
3421 cataataaat ttttttttct ctccaaaaaa aaaaaaaaaa
//