LOCUS BC022567 2734 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens carbohydrate (keratan sulfate Gal-6) sulfotransferase
1, mRNA (cDNA clone MGC:27060 IMAGE:4814499), complete cds.
ACCESSION BC022567
VERSION BC022567.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2734)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2734)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: k Column: 20.
FEATURES Location/Qualifiers
source 1..2734
/db_xref="H-InvDB:HIT000050777"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:27060 IMAGE:4814499"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2734
/gene="CHST1"
/gene_synonym="C6ST"
/gene_synonym="KS6ST"
/gene_synonym="KSGal6ST"
/db_xref="GeneID:8534"
/db_xref="HGNC:HGNC:1969"
/db_xref="MIM:603797"
CDS 672..1907
/gene="CHST1"
/gene_synonym="C6ST"
/gene_synonym="KS6ST"
/gene_synonym="KSGal6ST"
/codon_start=1
/product="carbohydrate (keratan sulfate Gal-6)
sulfotransferase 1"
/protein_id="AAH22567.1"
/db_xref="GeneID:8534"
/db_xref="HGNC:HGNC:1969"
/db_xref="MIM:603797"
/translation="MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLAEAGLAE
RLCEESPTFAYNLSRKTHILILATTRSGSSFVGQLFNQHLDVFYLFEPLYHVQNTLIP
RFTQGKSPADRRVMLGASRDLLRSLYDCDLYFLENYIKPPPVNHTTDRIFRRGASRVL
CSRPVCDPPGPADLVLEEGDCVRKCGLLNLTVAAEACRERSHVAIKTVRVPEVNDLRA
LVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRLWYGTGRKPYNLDVTQLTTVC
EDFSNSVSTGLMRPPWLKGKYMLVRYEDLARNPMKKTEEIYGFLGIPLDSHVARWIQN
NTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQQVLAQLGYKIAASEE
ELKNPSVSLVEERDFRPFS"
BASE COUNT 484 a 916 c 810 g 524 t
ORIGIN
1 gctcggcgct gtagccgccg ctgccgccgc tgctcttggc tcggggacgc gggcgggcgc
61 tccgagaggc tctggtgcct gcggctgctg ctctcctccg acgcccgggg ctgcggcgct
121 ccgggtcccg gcccctgtcc cggcatctct cgggtccctg agccccggcc acgggtcccg
181 cgtccggccg gagagaacgc actcagctgc tcgagccgcc ccgggctcgc gcccccgggc
241 catgaagagg ggcccgtgag gcgcgcgcgg agtcggagga agaggaggga ggagggaggc
301 cgaggaggag ggcgcgggag gcggaggatg ccgccgcggc tgctgccgcc gccgccaccc
361 gcgggtcccc ggcgaccctg actccagacc cgaggatgga gccggcgctg ggcgctgcag
421 ctgctcccgg cgcgtccccg accaggtagc tggtgtcact tcggtgtggt tggaagaaga
481 ctttctcccc agctgcattc ccggaggcgc cctttcgacc tggaggccgg gtctgctggc
541 cacagggctg ccgcactggc tgggactgcc agctgggcct ggagacgctg gtggctgtgg
601 actccccagc ttggagcagt ccctctttga cctcacccct tggagaagca accccatgaa
661 ggtgcccagc catgcaatgt tcctggaagg ccgtcctcct ccttgccctg gcctccattg
721 ccatccagta cacggccatc cgcaccttca ccgccaagtc ctttcacacc tgccccgggc
781 tggcagaggc cgggctggcc gagcgactgt gcgaggagag ccccaccttc gcctacaacc
841 tctcccgcaa gacccacatc ctcatcctgg ccaccacgcg cagcggctcc tccttcgtgg
901 gccagctctt caaccagcac ctggacgtct tctacctgtt tgagcccctc taccacgtcc
961 agaacacgct catcccccgc ttcacccagg gcaagagccc ggccgaccgg cgggtcatgc
1021 taggcgccag ccgcgacctc ctgcggagcc tctacgactg cgacctctac ttcctggaga
1081 actacatcaa gccgccgccg gtcaaccaca ccaccgacag gatcttccgc cgcggggcca
1141 gccgggtcct ctgctcccgg cctgtgtgcg accctccggg gccagccgac ctggtcctgg
1201 aggaggggga ctgtgtgcgc aagtgcgggc tactcaacct gaccgtggcg gccgaggcgt
1261 gccgcgagcg cagccacgtg gccatcaaga cggtgcgcgt gcccgaggtg aacgacctgc
1321 gcgccctggt ggaagacccg cgattaaacc tcaaggtcat ccagctggtc cgagaccccc
1381 gcggcattct ggcttcgcgc agcgagacct tccgcgacac gtaccggctc tggcggctct
1441 ggtacggcac cgggaggaaa ccctacaacc tggacgtgac gcagctgacc acggtgtgcg
1501 aggacttctc caactccgtg tccaccggcc tcatgcggcc cccgtggctc aagggcaagt
1561 acatgttggt gcgctacgag gacctggctc ggaaccctat gaagaagacc gaggagatct
1621 acgggttcct gggcatcccg ctggacagcc acgtggcccg ctggatccag aacaacacgc
1681 ggggcgaccc caccctgggc aagcacaaat acggcaccgt gcgaaactcg gcggccacgg
1741 ccgagaagtg gcgcttccgc ctctcctacg acatcgtggc ctttgcccag aacgcctgcc
1801 agcaggtgct ggcccagctg ggctacaaga tcgccgcctc ggaggaggag ctgaagaacc
1861 cctcggtcag cctggtggag gagcgggact tccgcccctt ctcgtgaccc gggcggtgcg
1921 ggtgggggcg ggaggcgcaa ggtgtcggtt ttgataaaat ggaccgtttt taactgttgc
1981 cttattaacc cctccctctc ccacctcatc ttcgtgtcct tcctgccccc agctcacccc
2041 actcccttct gccccttttt tgtctctgaa atttgcacta cgtcttggac gggaatcact
2101 ggggcagagg gcgcctgaag tagggtcccg ccccccccac cccattcaga cacatggatg
2161 ttgggtctct gtgcggacgg tgacaatgtt tacaagcacc acatttacac atccacacac
2221 gcacacgggc actcgcgagg cgacttctca agcttttgaa tgggtgagtg gtcgggtatc
2281 tagtttttgc actgtcttac tattcaaggt aagaggatac aaacaagagg accacttgtc
2341 tctaatttat gaatggtgtc catcctttcc ccatccctgc ctcctgcccc tgacgcccat
2401 ttcccccctt agagcagcga aactgccccc tcctgcccgc ccttgcctgt cggtgaggca
2461 ggtttttact gtgaggtgaa cgtggacctg tttctgtttc cagtctgtgg tgatgctgtc
2521 tgtctgtctg agtctcgtgg ccgcccctgg accagtgatg actgatgaat cttatgagct
2581 tctgattgat ctcggggtcc atctgtgata tttctttgtg ccaaaaagaa aaaaaaagag
2641 tggatcagtt tgctaaatga acattgaaat tgaaatgctt tatctgtgtt ttctgtaaat
2701 aaaagagtgc aataatcgaa aaaaaaaaaa aaaa
//