LOCUS BC022386 2323 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 3 (cystine, dibasic and neutral
amino acid transporters, activator of cystine, dibasic and neutral
amino acid transport), member 1, mRNA (cDNA clone MGC:24059
IMAGE:4556946), complete cds.
ACCESSION BC022386
VERSION BC022386.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2323)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2323)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 36 Row: e Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23308570.
FEATURES Location/Qualifiers
source 1..2323
/db_xref="H-InvDB:HIT000039513"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24059 IMAGE:4556946"
/tissue_type="Kidney"
/clone_lib="NIH_MGC_75"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2323
/gene="SLC3A1"
/gene_synonym="ATR1"
/gene_synonym="CSNU1"
/gene_synonym="D2H"
/gene_synonym="NBAT"
/gene_synonym="RBAT"
/db_xref="GeneID:6519"
/db_xref="HGNC:HGNC:11025"
/db_xref="MIM:104614"
CDS 77..2134
/gene="SLC3A1"
/gene_synonym="ATR1"
/gene_synonym="CSNU1"
/gene_synonym="D2H"
/gene_synonym="NBAT"
/gene_synonym="RBAT"
/codon_start=1
/product="solute carrier family 3 (cystine, dibasic and
neutral amino acid transporters, activator of cystine,
dibasic and neutral amino acid transport), member 1"
/protein_id="AAH22386.1"
/db_xref="GeneID:6519"
/db_xref="HGNC:HGNC:11025"
/db_xref="MIM:104614"
/translation="MAEDKSKRDSIEMSMKGCQTNNGFVHNEDILEQTPDPGSSTDNL
KHSTRGILGSQEPDFKGVQPYAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIA
ATIAIIALSPKCLDWWQEGPMYQIYPRSFKDSNKDGNGDLKGIQDKLDYITALNIKTV
WITSFYKSSLKDFRYGVEDFREVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSD
KHIWFQLSRTRTGKYTDYYIWHDCTHENGKTIPPNNWLSVYGNSSWHFDEVRNQCYFH
QFMKEQPDLNFRNPDVQEEIKEILRFWLTKGVDGFSLDAVKFLLEAKHLRDEIQVNKT
QIPDTVTQYSELYHDFTTTQVGMHDIVRSFRQTMDQYSTEPGRYRFMGTEAYAESIDR
TVMYYGLPFIQEADFPFNNYLSMLDTVSGNSVYEVITSWMENMPEGKWPNWMIGGPDS
SRLTSRLGNQYVNVMNMLLFTLPGTPITYYGEEIGMGNIVAANLNESYDINTLRSKSP
MQWDNSSNAGFSEASNTWLPTNSDYHTVNVDVQKTQPRSALKLYQDLSLLHANELLLN
RGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFGESTLLNLHNMISGLPAKIRIRLST
NSADKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQTAFRDRCFVSNRACYSSVLNILY
TSC"
BASE COUNT 714 a 499 c 515 g 595 t
ORIGIN
1 gaccaagcat tcagcaagcc actcttccac ctcccttact gcaggaaggc actccgaaga
61 cataagtcgg tgagacatgg ctgaagataa aagcaagaga gactccatcg agatgagtat
121 gaagggatgc cagacaaaca acgggtttgt ccataatgaa gacattctgg agcagacccc
181 ggatccaggc agctcaacag acaacctgaa gcacagcacc aggggcatcc ttggctccca
241 ggagcccgac ttcaagggcg tccagcccta tgcggggatg cccaaggagg tgctgttcca
301 gttctctggc caggcccgct accgcatacc tcgggagatc ctcttctggc tcacagtggc
361 ttctgtgctg gtgctcatcg cggccaccat agccatcatt gccctctctc caaagtgcct
421 agactggtgg caggaggggc ccatgtacca gatctaccca aggtctttca aggacagtaa
481 caaggatggg aacggagatc tgaaaggtat tcaagataaa ctggactaca tcacagcttt
541 aaatataaaa actgtttgga ttacttcatt ttataaatcg tcccttaaag atttcagata
601 tggtgttgaa gatttccggg aagttgatcc catttttgga acgatggaag attttgagaa
661 tctggttgca gccatacatg ataaaggttt aaaattaatc atcgatttca taccaaacca
721 cacgagtgat aaacatattt ggtttcaatt gagtcggaca cggacaggaa aatatactga
781 ttattatatc tggcatgact gtacccatga aaatggcaaa accattccac ccaacaactg
841 gttaagtgtg tatggaaact ccagttggca ctttgacgaa gtgcgaaacc aatgttattt
901 tcatcagttt atgaaagagc aacctgattt aaatttccgc aatcctgatg ttcaagaaga
961 aataaaagaa attttacggt tctggctcac aaagggtgtt gatggtttta gtttggatgc
1021 tgttaaattc ctcctagaag caaagcacct gagagatgag atccaagtaa ataagaccca
1081 aatcccggac acggtcacac aatactcgga gctgtaccat gacttcacca ccacgcaggt
1141 gggaatgcac gacattgtcc gcagcttccg gcagaccatg gaccaataca gcacggagcc
1201 cggcagatac aggttcatgg ggactgaagc ctatgcagag agtattgaca ggaccgtgat
1261 gtactatgga ttgccattta tccaagaagc tgattttccc ttcaacaatt acctcagcat
1321 gctagacact gtttctggga acagcgtgta tgaggttatc acatcctgga tggaaaacat
1381 gccagaagga aaatggccta actggatgat tggtggacca gacagttcac ggctgacttc
1441 gcgtttgggg aatcagtatg tcaacgtgat gaacatgctt cttttcacac tccctggaac
1501 tcctataact tactatggag aagaaattgg aatgggaaat attgtagccg caaatctcaa
1561 tgaaagctat gatattaata cccttcgctc aaagtcacca atgcagtggg acaatagttc
1621 aaatgctggt ttttctgaag ctagtaacac ctggttacct accaattcag attaccacac
1681 tgtgaatgtt gatgtccaaa agactcagcc cagatcggct ttgaagttat atcaagattt
1741 aagtctactt catgccaatg agctactcct caacaggggc tggttttgcc atttgaggaa
1801 tgacagccac tatgttgtgt acacaagaga gctggatggc atcgacagaa tctttatcgt
1861 ggttctgaat tttggagaat caacactgtt aaatctacat aatatgattt cgggccttcc
1921 cgctaaaata agaataaggt taagtaccaa ttctgccgac aaaggcagta aagttgatac
1981 aagtggcatt tttctggaca agggagaggg actcatcttt gaacacaaca cgaagaatct
2041 ccttcatcgc caaacagctt tcagagatag atgctttgtt tccaatcgag catgctattc
2101 cagtgtactg aacatactgt atacctcgtg ttaggcacct ttatgaagag atgaagacac
2161 tggcatttca gtgggattgt aagcatttgt aatagcttca tgtacagcat gctgcttggt
2221 gaacaatcat taattcttcg atatttctgt agcttgaatg taaccgcttt aagaaaggtt
2281 ctcaaatgtt ttgaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//