LOCUS BC016056 1294 bp mRNA linear HUM 24-JUL-2006
DEFINITION Homo sapiens claudin 3, mRNA (cDNA clone MGC:23079 IMAGE:4867858),
complete cds.
ACCESSION BC016056
VERSION BC016056.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1294)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1294)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: k Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21536298.
FEATURES Location/Qualifiers
source 1..1294
/db_xref="H-InvDB:HIT000037468"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23079 IMAGE:4867858"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1294
/gene="CLDN3"
/gene_synonym="CPE-R2"
/gene_synonym="HRVP1"
/gene_synonym="RVP1"
/db_xref="GeneID:1365"
/db_xref="HGNC:HGNC:2045"
/db_xref="MIM:602910"
CDS 198..860
/gene="CLDN3"
/gene_synonym="CPE-R2"
/gene_synonym="HRVP1"
/gene_synonym="RVP1"
/codon_start=1
/product="claudin 3"
/protein_id="AAH16056.1"
/db_xref="GeneID:1365"
/db_xref="HGNC:HGNC:2045"
/db_xref="MIM:602910"
/translation="MSMGLEITGTALAVLGWLGTIVCCALPMWRVSAFIGSNIITSQN
IWEGLWMNCVVQSTGQMQCKVYDSLLALPQDLQAARALIVVAILLAAFGLLVALVGAQ
CTNCVQDDTAKAKITIVAGVLFLLAALLTLVPVSWSANTIIRDFYNPVVPEAQKREMG
AGLYVGWAAAALQLLGGALLCCSCPPREKKYTATKVVYSAPRSTGPGASLGTGYDRKD
YV"
BASE COUNT 247 a 454 c 407 g 186 t
ORIGIN
1 caaagccaca ggcaggtgca ggcgcagccg cggcgagagc gtatggagcc gagccgttag
61 cgcgcgccgt cggtgagtca gtccgtccgt ccgtccgtcc gtcggggcgc cgcagctccc
121 gccaggccca gcggccccgg cccctcgtct ccccgcaccc ggagccaccc ggtggagcgg
181 gccttgccgc ggcagccatg tccatgggcc tggagatcac gggcaccgcg ctggccgtgc
241 tgggctggct gggcaccatc gtgtgctgcg cgttgcccat gtggcgcgtg tcggccttca
301 tcggcagcaa catcatcacg tcgcagaaca tctgggaggg cctgtggatg aactgcgtgg
361 tgcagagcac cggccagatg cagtgcaagg tgtacgactc gctgctggca ctgccacagg
421 accttcaggc ggcccgcgcc ctcatcgtgg tggccatcct gctggccgcc ttcgggctgc
481 tagtggcgct ggtgggcgcc cagtgcacca actgcgtgca ggacgacacg gccaaggcca
541 agatcaccat cgtggcaggc gtgctgttcc ttctcgccgc cctgctcacc ctcgtgccgg
601 tgtcctggtc ggccaacacc attatccggg acttctacaa ccccgtggtg cccgaggcgc
661 agaagcgcga gatgggcgcg ggcctgtacg tgggctgggc ggccgcggcg ctgcagctgc
721 tggggggcgc gctgctctgc tgctcgtgtc ccccacgcga gaagaagtac acggccacca
781 aggtcgtcta ctccgcgccg cgctccaccg gcccgggagc cagcctgggc acaggctacg
841 accgcaagga ctacgtctaa gggacagacg cagggagacc ccaccaccac caccaccacc
901 aacaccacca ccaccaccgc gagctggagc gcgcaccagg ccatccagcg tgcagccttg
961 cctcggaggc cagcccaccc ccagaagcca ggaagccccc gcgctggact ggggcagctt
1021 ccccagcagc cacggctttg cgggccgggc agtcgacttc ggggcccagg gaccaacctg
1081 catggactgt gaaacctcac ccttctggag cacggggcct gggtgaccgc caatacttga
1141 ccaccccgtc gagccccatc gggccgctgc ccccatgctc gcgctgggca gggaccggca
1201 gccctggaag gggcacttga tatttttcaa taaaagcctt tcgttttgca aaaaaaaaaa
1261 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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