LOCUS BC014962 1699 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens GDNF family receptor alpha 1, mRNA (cDNA clone MGC:23045 IMAGE:4874042), complete cds. ACCESSION BC014962 VERSION BC014962.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1699) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1699) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 34 Row: m Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 22035690. FEATURES Location/Qualifiers source 1..1699 /db_xref="H-InvDB:HIT000036925" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:23045 IMAGE:4874042" /tissue_type="Eye, normal, pigmented retinal epithelium" /clone_lib="NIH_MGC_43" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1699 /gene="GFRA1" /gene_synonym="GDNFR" /gene_synonym="GFR-ALPHA-1" /gene_synonym="MGC23045" /gene_synonym="RET1L" /gene_synonym="RETL1" /gene_synonym="TRNR1" /db_xref="GeneID:2674" /db_xref="HGNC:HGNC:4243" /db_xref="MIM:601496" CDS 254..1636 /gene="GFRA1" /gene_synonym="GDNFR" /gene_synonym="GFR-ALPHA-1" /gene_synonym="MGC23045" /gene_synonym="RET1L" /gene_synonym="RETL1" /gene_synonym="TRNR1" /codon_start=1 /product="GDNF family receptor alpha 1" /protein_id="AAH14962.1" /db_xref="GeneID:2674" /db_xref="HGNC:HGNC:4243" /db_xref="MIM:601496" /translation="MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQSCST KYRTLRQCVAGKETNFSLASGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRI YWSMYQSLQGNDLLEDSPYEPVNSRLSDIFRVVPFISVEHIPKGNNCLDAAKACNLDD ICKKYRSAYITPCTTSVSNDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTE RRRQTIVPVCSYEEREKPNCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKEN YADCLLAYSGLIGTVMTPNYIDSSSLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLK NAIQAFGNGSDVTVWQPAFPVQTTTATTTTALRVKNKPLGPAGSENEIPTHVLPPCAN LQAQKLKSNVSGNTHLCISNGNYEKEGLGASSHITTKSMAAPPSCGLSPLLVLVVTAL STLLSLTETS" BASE COUNT 427 a 482 c 447 g 343 t ORIGIN 1 cttccaggtt gggtcggacc tgaaccccta aaagcggaac cgcctcccgc cctcgccatc 61 ccggagctga gtcgccggcg gcggtggctg ctgccagacc cggagtttcc tctttcactg 121 gatggagctg aactttgggc ggccagagca gcacagctgt ccggggatcg ctgcatgctg 181 agctccctcg gcaagaccca gcggcggctc gggatttttt tgggggggcg gggaccagcc 241 ccgcgccggc accatgttcc tggcgaccct gtacttcgcg ctgccgctct tggacttgct 301 cctgtcggcc gaagtgagcg gcggagaccg cctggattgc gtgaaagcca gtgatcagtg 361 cctgaaggag cagagctgca gcaccaagta ccgcacgcta aggcagtgcg tggcgggcaa 421 ggagaccaac ttcagcctgg catccggcct ggaggccaag gatgagtgcc gcagcgccat 481 ggaggccctg aagcagaagt cgctctacaa ctgccgctgc aagcggggta tgaagaagga 541 gaagaactgc ctgcgcattt actggagcat gtaccagagc ctgcagggaa atgatctgct 601 ggaggattcc ccatatgaac cagttaacag cagattgtca gatatattcc gggtggtccc 661 attcatatca gtggagcaca ttcccaaagg gaacaactgc ctggatgcag cgaaggcctg 721 caacctcgac gacatttgca agaagtacag gtcggcgtac atcaccccgt gcaccaccag 781 cgtgtccaat gatgtctgca accgccgcaa gtgccacaag gccctccggc agttctttga 841 caaggtcccg gccaagcaca gctacggaat gctcttctgc tcctgccggg acatcgcctg 901 cacagagcgg aggcgacaga ccatcgtgcc tgtgtgctcc tatgaagaga gggagaagcc 961 caactgtttg aatttgcagg actcctgcaa gacgaattac atctgcagat ctcgccttgc 1021 ggattttttt accaactgcc agccagagtc aaggtctgtc agcagctgtc taaaggaaaa 1081 ctacgctgac tgcctcctcg cctactcggg gcttattggc acagtcatga cccccaacta 1141 catagactcc agtagcctca gtgtggcccc atggtgtgac tgcagcaaca gtgggaacga 1201 cctagaagag tgcttgaaat ttttgaattt cttcaaggac aatacatgtc ttaaaaatgc 1261 aattcaagcc tttggcaatg gctccgatgt gaccgtgtgg cagccagcct tcccagtaca 1321 gaccaccact gccactacca ccactgccct ccgggttaag aacaagcccc tggggccagc 1381 agggtctgag aatgaaattc ccactcatgt tttgccaccg tgtgcaaatt tacaggcaca 1441 gaagctgaaa tccaatgtgt cgggcaatac acacctctgt atttccaatg gtaattatga 1501 aaaagaaggt ctcggtgctt ccagccacat aaccacaaaa tcaatggctg ctcctccaag 1561 ctgtggtctg agcccactgc tggtcctggt ggtaaccgct ctgtccaccc tattatcttt 1621 aacagaaaca tcatagctgc attaaaaaaa tacaatatgg acatgtaaaa agacaaaaac 1681 caaaaaaaaa aaaaaaaaa //