LOCUS BC013109 959 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CKLF-like MARVEL transmembrane domain containing 5,
mRNA (cDNA clone MGC:21625 IMAGE:4214683), complete cds.
ACCESSION BC013109
VERSION BC013109.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 959)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 959)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: h Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32130532.
FEATURES Location/Qualifiers
source 1..959
/db_xref="H-InvDB:HIT000036126"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21625 IMAGE:4214683"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..959
/gene="CMTM5"
/gene_synonym="FLJ37521"
/db_xref="GeneID:116173"
/db_xref="HGNC:HGNC:19176"
/db_xref="MIM:607888"
CDS 190..660
/gene="CMTM5"
/gene_synonym="FLJ37521"
/codon_start=1
/product="CKLF-like MARVEL transmembrane domain containing
5"
/protein_id="AAH13109.1"
/db_xref="GeneID:116173"
/db_xref="HGNC:HGNC:19176"
/db_xref="MIM:607888"
/translation="MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELAL
TLIIFICFTASISAYMAAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAI
IIFLVVSFAAVTSRDGAAIAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ"
BASE COUNT 174 a 296 c 257 g 232 t
ORIGIN
1 gagggcccat ctgggcaagg cccccatcgc ctgccttctc tcccggggcc ctgtgggcaa
61 gcctcctgct tcactttcag gtttctcgaa gtgccttctt gctcctgtct gtttccccat
121 cctgccagat ttctgtttct cttgctgggc ttttggcagt agggggctgt gttggtgggc
181 cctacgaaga tgctcagtgc tcgagatcgc cgggaccggc accctgagga gggggtagtt
241 gcagagctcc agggcttcgc ggtggacaag gccttcctca cctcccacaa gggcatcctg
301 ctggaaaccg agctggccct gaccctcatc atcttcatct gcttcacggc ctccatctct
361 gcctacatgg ccgcggcgct actggagttc ttcatcacac ttgccttcct cttcctctat
421 gccacccagt actaccagcg cttcgaccga attaactggc cctgtctgga cttcctgcgc
481 tgtgtcagtg ccatcatcat cttcctggtg gtctcctttg cagctgtgac ctcccgggac
541 ggagctgcca ttgctgcttt tgtttttggc atcatcctgg tttccatctt tgcctatgat
601 gccttcaaga tctaccggac tgagatggca cccggggcca gccaggggga ccagcagtga
661 ctctggggct acctggctcc taggcccagc cagccagaga ggacagtgga gcccagacac
721 gtctccttgg gattcactag cccccagccc gccaaacccc accccagccc tacacagcag
781 tctggcctga gacgtcactg gggacttatc tgtggagcct ggtgctccag gatgtggctt
841 ctcatgaagc tctggccaga ggaggggaac ttattggggg agggggggtg gaggggagga
901 atctggacct ctaagtcatt cccaaattaa aatattcaaa ttctaaaaaa aaaaaaaaa
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