LOCUS BC012885 2072 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens plexin domain containing 2, mRNA (cDNA clone MGC:17681
IMAGE:3865073), complete cds.
ACCESSION BC012885
VERSION BC012885.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2072)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2072)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: k Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 17511212.
FEATURES Location/Qualifiers
source 1..2072
/db_xref="H-InvDB:HIT000036013"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17681 IMAGE:3865073"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_66"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2072
/gene="PLXDC2"
/gene_synonym="FLJ14623"
/gene_synonym="TEM7R"
/db_xref="GeneID:84898"
/db_xref="MIM:606827"
CDS 244..1686
/gene="PLXDC2"
/gene_synonym="FLJ14623"
/gene_synonym="TEM7R"
/codon_start=1
/product="PLXDC2 protein"
/protein_id="AAH12885.1"
/db_xref="GeneID:84898"
/db_xref="MIM:606827"
/translation="MARFPKADLAAAGVMLLCHFFTDQFQFADGKPGDQILDWQYGVT
QAFPHTEEEVEVDSHAYSHRWKRNLDFLKAVDTNRASVGQDSPEPRSFTDLLLDDGQD
NNTQIERVNLSFDFPFYGHFLREITVATGGFIYTGEVVHRMLTATQYIAPLMANFDPS
VSRNSTVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRIIFGYKEIPVLVT
QISSTNHPVKVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAVEMTPL
PTCLQFNRCGPCVSSQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEESKEKMCENT
EPVETSSRTTTTVGATTTQFRVLTTTRRAVTSQFPTSLPTEDDTKIALHLKDNGASTD
DSAAEKKGGTLHAGLIIGILILVLIVATAILVTVYMYHHPTSAASIFFIERRPSRWPA
MKFRRGSGHPAYAEVEPVGEKEGFIVSEQC"
misc_feature 1078..1212
/gene="PLXDC2"
/gene_synonym="FLJ14623"
/gene_synonym="TEM7R"
/note="PSI; Region: domain found in Plexins, Semaphorins
and Integrins"
/db_xref="CDD:smart00423"
BASE COUNT 613 a 498 c 485 g 476 t
ORIGIN
1 gggctgcgag tgtggcaagt tgcaaagaga gcctcagagg tccgaagagc gctgcgctcc
61 tactcgcgtt cgcttcttcc tcttctcggt tccctactgt gaaatcgcag cgacatttac
121 aaaggcctcc gggtcctacc gagaccgatc cgcagcgttt ggcccggtcg tgcctattgc
181 atcgggagcc cccgagcacc ggcgaaggac tggcgggtgg ggtagggagg tggcggcggc
241 ggcatggcga ggttcccgaa ggccgacctg gccgctgcag gagttatgtt actttgccac
301 ttcttcacgg accagtttca gttcgccgat gggaaacccg gagaccaaat ccttgattgg
361 cagtatggag ttactcaggc cttccctcac acagaggagg aggtggaagt tgattcacac
421 gcgtacagcc acaggtggaa aagaaacttg gactttctca aggcggtaga cacgaaccga
481 gcaagcgtcg gccaagactc tcctgagccc agaagcttca cagacctgct gctggatgat
541 gggcaggaca ataacactca gatcgagaga gtgaatctgt ccttcgattt tccattttat
601 ggccacttcc tacgtgaaat cactgtggca accgggggtt tcatatacac tggagaagtc
661 gtacatcgaa tgctaacagc cacacagtac atagcacctt taatggcaaa tttcgatccc
721 agtgtatcca gaaattcaac tgtcagatat tttgataatg gcacagcact tgtggtccag
781 tgggaccatg tacatctcca ggataattat aacctgggaa gcttcacatt ccaggcaacc
841 ctgctcatgg atggacgaat catctttgga tacaaagaaa ttcctgtctt ggtcacacag
901 ataagttcaa ccaatcatcc agtgaaagtc ggactgtccg atgcatttgt cgttgtccac
961 aggatccaac aaattcccaa tgttcgaaga agaacaattt atgaatacca ccgagtagag
1021 ctacaaatgt caaaaattac caacatttcg gctgtggaga tgaccccatt acccacatgc
1081 ctccagttta acagatgtgg cccctgtgta tcttctcaga ttggcttcaa ctgcagttgg
1141 tgtagtaaac ttcaaagatg ttccagtgga tttgatcgtc atcggcagga ctgggtggac
1201 agtggatgcc ctgaagagtc aaaagagaag atgtgtgaga atacagaacc agtggaaact
1261 tcttctcgaa ccaccacaac cgtaggagcg acaaccaccc agttcagggt cctaactacc
1321 accagaagag cagtgacttc tcagtttccc accagcctcc ctacagaaga tgataccaag
1381 atagcactac atctaaaaga taatggagct tctacagatg acagtgcagc tgagaagaaa
1441 gggggaaccc tccacgctgg cctcatcatt ggaatcctca tcctggtcct cattgtagcc
1501 acagccattc ttgtgacagt ctatatgtat caccacccaa catcagcagc cagcatcttc
1561 tttattgaga gacgcccaag cagatggcct gcgatgaagt ttagaagagg ctctggacat
1621 cctgcctatg ctgaagttga accagttgga gagaaagaag gctttattgt atcagagcag
1681 tgctaaaatt tctaggacag aacaacacca gtactggttt acaggtgtta agactaaaat
1741 tttgcctata cctttaagac aaacaaacaa acacacacac aaacaagctc taagctgctg
1801 tagcctgaag aagacaagat ttctggacaa gctcagccca ggaaacaaag ggtaaacaaa
1861 aaactaaaac ttatacaaga taccatttac actgaacata gaattcccta gtggaatgtc
1921 atctatagtt cactcggaac atctcccgtg gacttatctg aagtatgaca agattataat
1981 gcttttggct taggtgcagg gttgcaaagg gatcagaaaa aaaaaatcat aataaagctt
2041 tagttcatga gggatcgaaa aaaaaaaaaa aa
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