LOCUS BC012471 1281 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens claudin 1, mRNA (cDNA clone MGC:21289 IMAGE:4500534),
complete cds.
ACCESSION BC012471
VERSION BC012471.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1281)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1281)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: e Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21536297.
FEATURES Location/Qualifiers
source 1..1281
/db_xref="H-InvDB:HIT000035830"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21289 IMAGE:4500534"
/tissue_type="Bladder, transitional cell papilloma"
/clone_lib="NIH_MGC_93"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1281
/gene="CLDN1"
/gene_synonym="CLD1"
/gene_synonym="ILVASC"
/gene_synonym="SEMP1"
/db_xref="GeneID:9076"
/db_xref="HGNC:HGNC:2032"
/db_xref="MIM:603718"
CDS 199..834
/gene="CLDN1"
/gene_synonym="CLD1"
/gene_synonym="ILVASC"
/gene_synonym="SEMP1"
/codon_start=1
/product="claudin 1"
/protein_id="AAH12471.1"
/db_xref="GeneID:9076"
/db_xref="HGNC:HGNC:2032"
/db_xref="MIM:603718"
/translation="MANAGLQLLGFILAFLGWIGAIVSTALPQWRIYSYAGDNIVTAQ
AMYEGLWMSCVSQSTGQIQCKVFDSLLNLSSTLQATRALMVVGILLGVIAIFVATVGM
KCMKCLEDDEVQKMRMAVIGGAIFLLAGLAILVATAWYGNRIVQEFYDPMTPVNARYE
FGQALFTGWAAASLCLLGGALLCCSCPRKTTSYPTPRPYPKPAPSSGKDYV"
BASE COUNT 341 a 321 c 297 g 322 t
ORIGIN
1 ccagactcca gcgccgcccc gggcgcggac cccaaccccg acccagagct tctccagcgg
61 cggcgcagcg agcagggctc cccgccttaa cttcctccgc ggggcccagc caccttcggg
121 agtccgggtt gcccacctgc aaactctccg ccttctgcac ctgccacccc tgagccagcg
181 cgggcgcccg agcgagtcat ggccaacgcg gggctgcagc tgttgggctt cattctcgcc
241 ttcctgggat ggatcggcgc catcgtcagc actgccctgc cccagtggag gatttactcc
301 tatgccggcg acaacatcgt gaccgcccag gccatgtacg aggggctgtg gatgtcctgc
361 gtgtcgcaga gcaccgggca gatccagtgc aaagtctttg actccttgct gaatctgagc
421 agcacattgc aagcaacccg tgccttgatg gtggttggca tcctcctggg agtgatagca
481 atctttgtgg ccaccgttgg catgaagtgt atgaagtgct tggaagacga tgaggtgcag
541 aagatgagga tggctgtcat tgggggcgcg atatttcttc ttgcaggtct ggctatttta
601 gttgccacag catggtatgg caatagaatc gttcaagaat tctatgaccc tatgacccca
661 gtcaatgcca ggtacgaatt tggtcaggct ctcttcactg gctgggctgc tgcttctctc
721 tgccttctgg gaggtgccct actttgctgt tcctgtcccc gaaaaacaac ctcttaccca
781 acaccaaggc cctatccaaa acctgcacct tccagcggga aagactacgt gtgacacaga
841 ggcaaaagga gaaaatcatg ttgaaacaaa ccgaaaatgg acattgagat actatcatta
901 acattaggac cttagaattt tgggtattgt aatctgaagt atggtattac aaaacaaaca
961 aacaaacaaa aaacccatgt gttaaaatac tcagtgctaa acatggctta atcttatttt
1021 atcttctttc ctcaatatag gagggaagat ttttccattt gtattactgc ttcccattga
1081 gtaatcatac tcaactgggg gaaggggtgc tccttaaata tatatagata tgtatatata
1141 catgtttttc tattaaaaat agacagtaaa atactattct cattatgttg atactagcat
1201 acttaaaata tctctaaaat aggtaaatgt atttaattcc atattgatga agatgttaaa
1261 aaaaaaaaaa aaaaaaaaaa a
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