LOCUS BC005325 1250 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens synovial sarcoma, X breakpoint 4, mRNA (cDNA clone MGC:12411 IMAGE:3961688), complete cds. ACCESSION BC005325 VERSION BC005325.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1250) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1250) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (27-MAR-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 16 Row: m Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 28559012. FEATURES Location/Qualifiers source 1..1250 /db_xref="H-InvDB:HIT000032379_04" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:12411 IMAGE:3961688" /tissue_type="Bladder, carcinoma" /clone_lib="NIH_MGC_53" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1250 /gene="SSX4" /gene_synonym="MGC12411" /db_xref="GeneID:6759" /db_xref="HGNC:HGNC:11338" /db_xref="MIM:300326" CDS 59..625 /gene="SSX4" /gene_synonym="MGC12411" /codon_start=1 /product="synovial sarcoma, X breakpoint 4" /protein_id="AAH05325.1" /db_xref="GeneID:6759" /db_xref="HGNC:HGNC:11338" /db_xref="MIM:300326" /translation="MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSE KIVYVYMKLNYEVMTKLGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFG SLQRIFPKIMPKKPAEEENGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRG KHAWTHRLRERKQLVVYEEISDPEEDDE" BASE COUNT 371 a 305 c 278 g 296 t ORIGIN 1 acacgccgat ttgccctttt gattcttcca caatcagggt gagactgctc ccagtgccat 61 gaacggagac gacgcctttg caaggagacc cagggatgat gctcaaatat cagagaagtt 121 acgaaaggcc ttcgatgata ttgccaaata cttctctaag aaagagtggg aaaagatgaa 181 atcctcggag aaaatcgtct atgtgtatat gaagctaaac tatgaggtca tgactaaact 241 aggtttcaag gtcaccctcc cacctttcat gcgtagtaaa cgggctgcag acttccacgg 301 gaatgatttt ggtaacgatc gaaaccacag gaatcaggtt gaacgtcctc agatgacttt 361 cggcagcctc cagagaatct tcccgaagat catgcccaag aagccagcag aggaagaaaa 421 tggtttgaag gaagtgccag aggcatctgg cccacaaaat gatgggaaac agctgtgccc 481 cccgggaaat ccaagtacct tggagaagat caacaagaca tctggaccca aaagggggaa 541 acatgcctgg acccacagac tgcgtgagag aaagcagctg gtggtttatg aagagatcag 601 cgaccctgag gaagatgacg agtaactccc ctcggggata tgacacatgc ccatgatgag 661 aagcagaacg tggtgacctt tcacgaacat gggcatggct gcggacccct cgtcatcagg 721 tgcatagcaa gtgaaagcaa gtgttcacaa cagtgaaaag ttgagcgtca tttttcttag 781 tgtgccaaga gttcgatgtt ggcgtttccg ctgtattttc ttgcagtgtg ccattctgtt 841 agacattagc gttttcgctg atgagcaaga catgcttaat gcatatttcg gcttgtgtat 901 ccatgcacct acctcagaaa acaagtattg tcaggtattc tctccataga acagcactac 961 cctcctctct ccccagatgt gactactgag gggaggtctg agtgtttaat ttccgatttt 1021 ttcctctgca tttacacaca caccacacac gcacacacac acaccaagta ccagtataag 1081 catctcccat ctgcttttct ccattgccat gcgtcctggt caagcccccc tcactctgtt 1141 tcctgttcag catgtactcc cctcatccga ttccgttgta tcagtcactg acagttaata 1201 aacctttgca aacgttcaac aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //