LOCUS BC004988 3828 bp mRNA linear HUM 17-NOV-2006
DEFINITION Homo sapiens fem-1 homolog a (C. elegans), mRNA (cDNA clone
MGC:4216 IMAGE:2957950), complete cds.
ACCESSION BC004988
VERSION BC004988.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3828)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3828)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 9 Row: h Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24308162.
FEATURES Location/Qualifiers
source 1..3828
/db_xref="H-InvDB:HIT000032136"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4216 IMAGE:2957950"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3828
/gene="FEM1A"
/gene_synonym="DKFZp762M136"
/gene_synonym="EPRAP"
/db_xref="GeneID:55527"
/db_xref="HGNC:HGNC:16934"
CDS 98..2107
/gene="FEM1A"
/gene_synonym="DKFZp762M136"
/gene_synonym="EPRAP"
/codon_start=1
/product="fem-1 homolog a (C. elegans)"
/protein_id="AAH04988.1"
/db_xref="GeneID:55527"
/db_xref="HGNC:HGNC:16934"
/translation="MDLRTAVYNAARDGKLQLLQKLLSGRSREELDELTGEVAGGGTP
LLIAARYGHLDVVEYLVDRCGASVEAGGSVHFDGETIEGAPPLWAASAAGHLDVVRSL
LRRGASVNRTTRTNSTPLRAACFDGHLEVVRYLVGEHQADLEVANRHGHTCLMISCYK
GHREIARYLLEQGAQVNRRSAKGNTALHDCAESGSLEILQLLLGCKARMERDGYGMTP
LLAASVTGHTNIVEYLIQEQPGQEQVAGGEAQPGLPQEDPSTSQGCAQPQGAPCCSSS
PEEPLNGESYESCCPTSREAAVEALELLGATYVDKKRDLLGALKHWRRAMELRHQGGE
YLPKPEPPQLVLAYDYSREVNTTEELEALITDPDEMRMQALLIRERILGPSHPDTSYY
IRYRGAVYADSGNFERCIRLWKYALDMQQSNLEPLSPMTASSFLSFAELFSYVLQDRA
AKGSLGTQIGFADLMGVLTKGVREVERALQLPREPGDSAQFTKALAIILHLLYLLEKV
ECTPSQEHLKHQTVYRLLKCAPRGKNGFTPLHMAVDKDTTNVGRYPVGRFPSLHVVKV
LLDCGADPDSRDFDNNTPLHIAAQNNCPAIMNALIEAGAHMDATNAFKKTAYELLDEK
LLARGTMQPFNYVTLQCLAARALDKNKIPYKGFIPEDLEAFIELH"
BASE COUNT 812 a 1153 c 1113 g 750 t
ORIGIN
1 gggggacggt gaaggttgcc tcccgcccgt ccgggctctg atcctccgtc tccccgtccc
61 ccggcggccg gcccatggcc tggcggaggc ccgaaccatg gacctccgca ccgccgtgta
121 caacgccgcc cgtgatggca agctgcagct gctccagaag ctgctcagcg gccggagccg
181 ggaggaactg gacgagctga cgggcgaggt ggccggcggg ggaacgccgc tactcatcgc
241 cgcccgctac ggccacctgg acgtggtgga gtacctggtg gaccggtgcg gcgcgagcgt
301 ggaggccggt ggctcggtgc acttcgatgg cgagaccatc gagggcgcgc cgccgctgtg
361 ggccgcctcc gcagccggcc acctggacgt ggtgcggagc ctgctgcgcc gcggggcctc
421 ggtgaaccgc accacgcgca ccaactccac gcctctccgc gccgcctgct tcgacggcca
481 cctggaggtg gtgcgctacc tggtcggcga gcaccaggcc gacctggagg tggccaaccg
541 gcacggccac acgtgcctca tgatctcgtg ctacaagggc caccgtgaga tcgcccgcta
601 cctgctggag cagggcgccc aggtgaaccg gcgcagcgcc aagggcaaca cggccctgca
661 tgactgcgcc gagtccggca gcctggagat cctgcagctg ctgctggggt gcaaggcccg
721 catggaacgt gacggctacg gcatgacccc gctgctcgcg gccagcgtga cgggccacac
781 caacatcgtg gagtacctca tccaggagca gcccggccag gagcaggtcg cagggggaga
841 ggctcagcct gggctgcccc aagaagaccc ctccaccagc caggggtgtg cgcagcctca
901 gggggctccg tgctgcagct cctccccaga ggaaccactg aacggggaat cttacgaaag
961 ctgctgtccc accagccggg aagctgccgt ggaagccttg gaattgctgg gagctacgta
1021 tgtggataag aaacgagatc tgcttggggc ccttaaacac tggaggcggg ccatggagct
1081 gcgtcaccag gggggcgagt acctgcccaa accggagccc ccacagctgg tcctggccta
1141 tgactattcc agggaggtca acaccaccga ggagctggag gcgctgatca ccgacccgga
1201 tgagatgcgc atgcaggccc tgttgatccg ggagcgcatc ctcggtccct cgcacccgga
1261 cacttcctat tacatccgtt acaggggtgc cgtgtacgcc gactcgggca atttcgagcg
1321 ctgcatccgc ttgtggaagt acgccctgga catgcaacag agcaacctgg agcctctgag
1381 ccccatgacc gccagcagct tcctctcctt cgcggaactc ttctcctacg tgcttcagga
1441 ccgggccgcc aaaggcagcc tgggcaccca gatcggcttt gcagacctca tgggggttct
1501 caccaaaggg gtccgggaag tggaacgggc cctgcagctg cccagggagc ccggagactc
1561 agcccagttc accaaggcgc tggccatcat cctccacctg ctctacctgc tggagaaagt
1621 ggagtgcacc cccagccagg agcacctgaa gcaccagacc gtctaccgcc tgctcaagtg
1681 cgcgcccagg ggcaagaacg gcttcacccc tctgcacatg gctgtggaca aggacaccac
1741 aaacgtgggc cgctatcccg tgggcagatt cccctccctg cacgtggtca aagtgctgct
1801 cgactgcggg gccgacccgg acagcaggga ttttgacaac aacaccccgc tacacatagc
1861 agcccagaac aactgcccgg ccatcatgaa tgccctgatc gaagcagggg cccacatgga
1921 cgccaccaat gccttcaaga agacggccta cgagctgctg gacgagaagc tgctggccag
1981 gggtaccatg cagcccttca actacgtgac cctgcagtgc cttgcggccc gggccctgga
2041 taagaacaag atcccttaca agggcttcat cccggaagat ctggaggcgt tcatcgaact
2101 gcactgacct gcccagaacg cctgcaccct cacctctccc ctctcctgct gagatggggg
2161 aaatccggct gcggcatagc agatgctcgt tcttgcctcc ttcaggcacc aatcaggaga
2221 agggttctgc ctcccatccc ctctacctgc agacagggtc ggaggtgtta gcgagccttt
2281 ggtgctagaa gcctgcgggg tcatgtgcta agaggacagt ctttctccgg gagcccgctc
2341 actcattctg agttaggaaa agacacaaga ccttccccac atcctgtctg cctgggttag
2401 ggaggccttt gccttgttac ctagaggcgg agggactgaa gccattgcgt tccttccctg
2461 ctagaaacac aggaagaagt tgaggacggt ctgccttccc tcgtcccttt acctggccag
2521 ataactccag ccgctgaata cagtgttagg actgggggct cctgagatga gagtttgaga
2581 ttcagggaat gagaccacct ctcatttctt ccagcatgat cgcgccctgc tcccgtgcca
2641 ccgtagtccc tggcagacag gcagggctct gcccagggca gcctgccact tgcatagctt
2701 tcggttggtt tggtgttctg tttatttaat aagtgggcag gttgcaagcg ttgcacagaa
2761 attctgagat tttactgcct tttttttttt tttaagaaag ttgtttgttg gactccataa
2821 gtgaatttca agcagtgagg attttgtggt gcctgagatg gccgagggca cagggagtga
2881 gctgtatgtg tgaggaattt ggtgagcgag ataaaagtcc acggtgtcaa cccctaaaac
2941 atgggtgacc gtacattttt atacatctcc actctacggc cttttacagg ctttccgatt
3001 ttacaggcct ttccaagttt ccattctcct tagagagaga actgtgcttc caaacagaaa
3061 tcaggagtga ccacaaagcc tgaaaacact ttgccaccca gcaaagaact ggcacaattg
3121 gtttgggtct gcattgccat agtgcccgag ttaaaactgc aggccactct gccttgcaaa
3181 cctcacgtgg cctctgattt cattgtgggt gcatccacag gtggcccgag ctgttctttc
3241 agctgctcca aggattgaga cccaagtcat catgaaaaag gcccaagtac agtcttaatg
3301 cgataaatcc actagctaag acgtcgagtg ccaagaccag ccttccagcc gaggtttgga
3361 caaagtctca ggttcccgtg actcagggta aggtgctggg gctgccagag gacctgcccc
3421 agcaagattt ttgtcaagag cgagactcca tcagcccagg cagacgggag caggttcttg
3481 gccagcgtag acagcagcaa acagcagcag ggaagccatt ctcactgcat cctccctgca
3541 gtagccacgg ccaggccctt aggaggagca gtgaccgggg gtgtccagaa atatcctgtc
3601 cctggatgga aactaggtct cgtttggatt tttttttttt ttttttttgc cgtgttagga
3661 aattatttat taatttacaa gacaggtttt aactcagccg aggtgggaaa tggtgtccct
3721 gtccctccca aagcacagag cacagaaatg aggccgttta catggcgagt ctccgtgctg
3781 gtgtttaagt cattaaaaag atactcaaag aaaaaaaaaa aaaaaaaa
//