LOCUS       BC004372                2387 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens CD44 molecule (Indian blood group), mRNA (cDNA clone
            MGC:10468 IMAGE:3638681), complete cds.
ACCESSION   BC004372
VERSION     BC004372.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2387)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2387)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-MAR-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
            Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
            Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
            Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
            Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
            Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
            Kim MacDonald,  Mike R. Mayo, Josh Moran, Diana Palmquist, JR
            Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
            Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 13 Row: p Column: 10
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 48255942.
FEATURES             Location/Qualifiers
     source          1..2387
                     /db_xref="H-InvDB:HIT000031897"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:10468 IMAGE:3638681"
                     /tissue_type="Pancreas, adenocarcinoma"
                     /clone_lib="NIH_MGC_39"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
     gene            1..2387
                     /gene="CD44"
                     /gene_synonym="CDW44"
                     /gene_synonym="ECMR-III"
                     /gene_synonym="HCELL"
                     /gene_synonym="IN"
                     /gene_synonym="LHR"
                     /gene_synonym="MC56"
                     /gene_synonym="MGC10468"
                     /gene_synonym="MUTCH-I"
                     /gene_synonym="Pgp1"
                     /db_xref="GeneID:960"
                     /db_xref="HGNC:HGNC:1681"
                     /db_xref="MIM:107269"
     CDS             132..2231
                     /gene="CD44"
                     /gene_synonym="CDW44"
                     /gene_synonym="ECMR-III"
                     /gene_synonym="HCELL"
                     /gene_synonym="IN"
                     /gene_synonym="LHR"
                     /gene_synonym="MC56"
                     /gene_synonym="MGC10468"
                     /gene_synonym="MUTCH-I"
                     /gene_synonym="Pgp1"
                     /codon_start=1
                     /product="CD44 molecule (Indian blood group)"
                     /protein_id="AAH04372.1"
                     /db_xref="GeneID:960"
                     /db_xref="HGNC:HGNC:1681"
                     /db_xref="MIM:107269"
                     /translation="MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSI
                     SRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNT
                     GVYILTSNTSQYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGE
                     YRTNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDR
                     IPATSTSSNTISAGWEPNEENEDERDRHLSFSGSGIDDDEDFISSTISTTPRAFDHTK
                     QNQDWTQWNPSHSNPEVLLQTTTRMTDVDRNGTTAYEGNWNPEAHPPLIHHEHHEEEE
                     TPHSTSTIQATPSSTTEETATQKEQWFGNRWHEGYRQTPREDSHSTTGTAAASAHTSH
                     PMQGRTTPSPEDSSWTDFFNPISHPMGRGHQAGRRMDMDSSHSTTLQPTANPNTGLVE
                     DLDRTGPLSMTTQQSNSQSFSTSHEGLEEDKDHPTTSTLTSSNRNDVTGGRRDPNHSE
                     GSTTLLEGYTSHYPHTKESRTFIPVTSAKTGSFGVTAVTVGDSNSNVNRSLSGDQDTF
                     HPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVC
                     IAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFM
                     TADETRNLQNVDMKIGV"
BASE COUNT          716 a          640 c          537 g          494 t
ORIGIN      
        1 cctcgtgccg cggaccccag cctctgccag gttcggtccg ccatcctcgt cccgtcctcc
       61 gccggcccct gccccgcgcc cagggatcct ccagctcctt tcgcccgcgc cctccgttcg
      121 ctccggacac catggacaag ttttggtggc acgcagcctg gggactctgc ctcgtgccgc
      181 tgagcctggc gcagatcgat ttgaatataa cctgccgctt tgcaggtgta ttccacgtgg
      241 agaaaaatgg tcgctacagc atctctcgga cggaggccgc tgacctctgc aaggctttca
      301 atagcacctt gcccacaatg gcccagatgg agaaagctct gagcatcgga tttgagacct
      361 gcaggtatgg gttcatagaa gggcatgtgg tgattccccg gatccacccc aactccatct
      421 gtgcagcaaa caacacaggg gtgtacatcc tcacatccaa cacctcccag tatgacacat
      481 attgcttcaa tgcttcagct ccacctgaag aagattgtac atcagtcaca gacctgccca
      541 atgcctttga tggaccaatt accataacta ttgttaaccg tgatggcacc cgctatgtcc
      601 agaaaggaga atacagaacg aatcctgaag acatctaccc cagcaaccct actgatgatg
      661 acgtgagcag cggctcctcc agtgaaagga gcagcacttc aggaggttac atcttttaca
      721 ccttttctac tgtacacccc atcccagacg aagacagtcc ctggatcacc gacagcacag
      781 acagaatccc tgctaccagt acgtcttcaa ataccatctc agcaggctgg gagccaaatg
      841 aagaaaatga agatgaaaga gacagacacc tcagtttttc tggatcaggc attgatgatg
      901 atgaagattt tatctccagc accatttcaa ccacaccacg ggcttttgac cacacaaaac
      961 agaaccagga ctggacccag tggaacccaa gccattcaaa tccggaagtg ctacttcaga
     1021 caaccacaag gatgactgat gtagacagaa atggcaccac tgcttatgaa ggaaactgga
     1081 acccagaagc acaccctccc ctcattcacc atgagcatca tgaggaagaa gagaccccac
     1141 attctacaag cacaatccag gcaactccta gtagtacaac ggaagaaaca gctacccaga
     1201 aggaacagtg gtttggcaac agatggcatg agggatatcg ccaaacaccc agagaagact
     1261 cccattcgac aacagggaca gctgcagcct cagctcatac cagccatcca atgcaaggaa
     1321 ggacaacacc aagcccagag gacagttcct ggactgattt cttcaaccca atctcacacc
     1381 ccatgggacg aggtcatcaa gcaggaagaa ggatggatat ggactccagt catagtacaa
     1441 cgcttcagcc tactgcaaat ccaaacacag gtttggtgga agatttggac aggacaggac
     1501 ctctttcaat gacaacgcag cagagtaatt ctcagagctt ctctacatca catgaaggct
     1561 tggaagaaga taaagaccat ccaacaactt ctactctgac atcaagcaat aggaatgatg
     1621 tcacaggtgg aagaagagac ccaaatcatt ctgaaggctc aactacttta ctggaaggtt
     1681 atacctctca ttacccacac acgaaggaaa gcaggacctt catcccagtg acctcagcta
     1741 agactgggtc ctttggagtt actgcagtta ctgttggaga ttccaactct aatgtcaatc
     1801 gttccttatc aggagaccaa gacacattcc accccagtgg ggggtcccat accactcatg
     1861 gatctgaatc agatggacac tcacatggga gtcaagaagg tggagcaaac acaacctctg
     1921 gtcctataag gacaccccaa attccagaat ggctgatcat cttggcatcc ctcttggcct
     1981 tggctttgat tcttgcagtt tgcattgcag tcaacagtcg aagaaggtgt gggcagaaga
     2041 aaaagctagt gatcaacagt ggcaatggag ctgtggagga cagaaagcca agtggactca
     2101 acggagaggc cagcaagtct caggaaatgg tgcatttggt gaacaaggag tcgtcagaaa
     2161 ctccagacca gtttatgaca gctgatgaga caaggaacct gcagaatgtg gacatgaaga
     2221 ttggggtgta acacctacac cattatcttg gaaagaaaca accgttggaa acataaccat
     2281 tacagggagc tgggacactt aacagatgca atgtgctact gattgtttca ttgcgaatct
     2341 tttttagcat aaaattttct actcttaaaa aaaaaaaaaa aaaaaaa
//