LOCUS Y16795 6673 bp DNA linear HUM 14-NOV-2006
DEFINITION Homo sapiens KRTHAP1 pseudogene.
ACCESSION Y16795
VERSION Y16795.1
KEYWORDS psihaA pseudogene; psihHaA gene; type I hair keratin 1.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1
AUTHORS Rogers M.A., Winter H., Wolf C., Heck M., Schweizer J.
TITLE Characterization of a 190-kilobase pair domain of human type I hair
keratin genes
JOURNAL J Biol Chem 273(41), 26683-26691(1998).
PUBMED 9756910
REFERENCE 2 (bases 1 to 6673)
AUTHORS Schweizer J.
JOURNAL Submitted (04-MAR-1998) to the INSDC. J. Schweizer, German Cancer
Research Center, Research Program 2, Im Neuenheimer Feld 280, 69120
Heidelberg, FRG
COMMENT RT-PCR of human hair follicle cDNA has shown that this pseudogene
is transcriptionally expressed. The putative exon 2 is spliced out,
and the putative intron between exon 4 and 5 is retained
in the transcript. Exon determination was performed by
comparison with other known human type I hair keratin genes.
FEATURES Location/Qualifiers
source 1..6673
/organism="Homo sapiens"
/mol_type="genomic DNA"
/db_xref="taxon:9606"
regulatory 786..791
/gene="KRTHAP1"
/regulatory_class="TATA_box"
exon 900..1352
/gene="KRTHAP1"
/number=1
CDS join(924..1352,2767..2849,3916..4072,4374..4535,
4611..4736)
/pseudo
/gene="KRTHAP1"
/note="formerly psihHaA pseudogene"
intron 1353..2766
/gene="KRTHAP1"
/number=1
exon 2767..2849
/gene="psiHaA"
/number=2
intron 2850..3915
/gene="KRTHAP1"
/number=2
exon 3916..4072
/gene="psiHaA"
/number=3
intron 4073..4373
/gene="KRTHAP1"
/number=3
exon 4374..4535
/gene="psiHaA"
/number=4
intron 4536..4610
/gene="KRTHAP1"
/number=4
exon 4611..4736
/gene="KRTHAP1"
/number=5
intron 4737..4755
/gene="KRTHAP1"
/number=5
BASE COUNT 1610 a 1571 c 1657 g 1835 t
ORIGIN
1 aagaccatgg tcctggtatt taagactttt cacaacctgg actcaatgca actttccggg
61 gcttggggat aatgtctcca ttataaatac caacacaact agactatttt ccattttcca
121 aatgtttgat tgtgtttatt ttgttctcta tgagagaagc tcattcccca accctttata
181 aaaaatatca ttcaaaacat atttggaaaa tcccctactc catgaagtct ttttccggtc
241 tctcagtgag ctctcttcca cctcgaaatc tttgcagctg tcttttaaaa aaaaaaaata
301 cttcctttta ctgtcttcat aatatcaaga tcatttactt ttttatcttt cttattaaaa
361 tctaaaatct ccttcttaca agacagcata gatgtgcgtt tgttccgcac tgggcactct
421 acaaatatct atcaaaacaa acaaatcatg atttttccct ttcttcaatg tgcctgattg
481 actaatattt taggttttgc tgcattggga acattcagag gtaggaaaag aatgtgggag
541 tgagagagac ttgcaggaca ttttaggagc ctttagttct tgattatttc atagacataa
601 gctgacagaa ggggaaagat ttcacagcca cagaaagtgg gctgcttgaa gaagaccttg
661 ttttctctgt tttccaggac cctgcagtga tgggaagaaa gaggttaggg cctctttcat
721 gagctcatta actctttata ggaaacaaaa accactgact aatagagtga ttgtataaca
781 attgacataa atattaatga ggaaaatgcc agttttcttg caccaacacc cactaaggct
841 tatataaggt ctacaggaga aggaagattt tggtgtcaag cagatccaac tgtgggcaaa
901 gcaggatctt gccttttagc accatgactt ctgaccattg cagttccctc ctcagcgggc
961 aggtttcaga ggccaacgct gcctctctgt gcctcttggc taatgtggca catgccaatc
1021 gagtccgtgt ggggtcgact cccctgggcc gcctcagcct ctgtctgccc ccaacctgcc
1081 acaccacttg tcccttgcca gggacctgcc acattcctgg caacatcgga atctgtgggg
1141 cctaccgcga aaacaccctg aacggccacg agaaggagac catgcagttc ctaaacgacc
1201 gcctggccaa ctacctggag aaggtgcgcc agctggagtg ggacaatgca gaactggaga
1261 ccaaactcca tgagaggagc aagtgccacg agtccagcgt gtgccgaaac taccagtcct
1321 acttctgcac catccaggag ctccagcaga aggtgaggtt tgcggtgcac cagatcaggg
1381 gtcaggaatc tgcttactgc ctgtcggcca aatccggccc accacctgct tttgcaaata
1441 aagttttatt ggttcatggc catgctcatg catttgtatg ttgtctgcag ctgcttttgt
1501 actacagtgg cagagttcag tcattgtaat ggagactgta gggtctgcaa agcctaaagt
1561 atttactatc tgacccttta caaaaaaaga ttactgaccc tgggtcagca gtggattttt
1621 tttttctttt aatgtgggaa gagaatctct tgagtgaagg tgaatgggaa tttgtaaagg
1681 atgagatgta gaatttatca ctctaggatt ctgagttcat gcttacttaa cttcagcaca
1741 taaaattcct aaatcgtagt cacaaaaatc atgctatttt catgaaaacc atgcaaaaac
1801 cgtgctgagt ttatgaaagt tgcagtatac tgaaactttc tggtgcagta aacagggcaa
1861 aaggaatatt tcctaacatc cttgccaagg cagtgtctat ccacacaaca gcatcaacct
1921 tcttatgcat attctattgt cacctttgat tatccagtta aagcttttga agagcctaca
1981 ttcttagttt tggagacaag aagacaagga atgtcaaaat aggggttaca gaaacctggc
2041 tagattcaga gaagacctgt ggggaggttg gacaaccaga ggaaagattc tttctttaga
2101 acagatccta ctttatctaa aacattcata gccagtcctc tgttctgtgg cctagttttt
2161 tttttttttt ttttgagaca aagtctcgct ctgtcaccca ggctggagtg cagtggtgca
2221 atctcagctc actgcaaact ctgcctccca ggttcaagtg attctcatgt ctcagcttcc
2281 tgagtagctg ggattacaag tgtgcgccac cactcctagc taacttttat atttttagta
2341 gagatggtgt ttcaccatgt tgcccaggct ggtcttgaac tcctgacctc aggtgatcca
2401 tctgccttgg tctcccaaag tgcggggatt acaggcatga gccactgcgt ccggccagat
2461 cttcttattt atattgggct aagcatcata tctggcaaaa tgaaagcaag tctttgttat
2521 atgttcagtt tgctactgtc ttccatctcc tggttccttt gactctatgt cttcatcctt
2581 ttccaagaag tctcttgcac atcttccttc ccacaccaca aaagcatctc ttgcacgttt
2641 gggagtttgt gttgtccagg cggatgctgt aggttcaact tcagccaata aaacttcctc
2701 tcacctgagg ctataggtgt ctctgggatc agtaagtcac ttactgagcc tactttctta
2761 ccccagattc tgtgcaccaa atcggagaac aataggctgg ttgtgcaaat agacaatgcc
2821 aaattggctg cagatgactt caggaccaag tgagttgggg ttggacaggg atgggaagga
2881 gccaagtgag agttggggtt ggatggggat gggacaatgc caagttggct gcttctgtct
2941 catgtggcat cggatgtcat tgacccagac cccaacccag tagttatagc agaagagaac
3001 aaagggcatt aagctcaaga tcctgaaaaa ctatccgctc tccagtggtt tagcattaac
3061 agtttacaac atgtgctaga atgcatcatc cacctggtaa gcaacttgtg aagcaggcgg
3121 gcagggatag aatctcctcc acaggtgggg accctgaggc ttggggtgct ggtgtgactt
3181 gccagaagcc atgtgggtac cgagtggcag agctgggact tggccttaaa ttttgtacca
3241 aattttcctt tcttgaagca atttcctgtg aaactgttgc cttaataagg atatgtttct
3301 gtgctgcagc ttgattaatt tgtgagtgct gataattcat agcagaaatc atgctccata
3361 gcctaagatg aaaacatgtg aaagtcaaag ggttgacacc acctgaggag ggtctaccct
3421 gggtgctgga agggcattgt gttttatcat ctttcttcgg ggcactgtgc aagtctcact
3481 cttctagagc taaagaaagc catttccttc ctctcatgct ggcaatgtgg cttttactct
3541 aatagggaat ccagggtccc tttgggtatg gggcttgtag agaggggcct gcagtgattg
3601 cactgtgttg caaatgcctg gttactttgc cacctccctt ttgggccatt gtgtgtaaag
3661 gcaggtgctg gctgtgtgtc catcacagta tcctcagtac cagctgctcc ccttggttca
3721 tctcaggtgc ttagtattga ctgagtgggg aacatcctgt tgctttctgg gctttgagca
3781 cactacacag gataagccaa ctcacaatta gatggcaaag ggcaggccag tggacttaca
3841 gctgcgagct gggagtcatg tcctggtgcc ccttcctgcc ctctaactgt cactcctgca
3901 ctttccctgt tacaggtacg agagagagcg ctcgctgcaa cagctggtgg aggctgacat
3961 ctgtggcctg cgcagggtgc tagacaacct caccctcgcc aagtgtgacc tggaggccca
4021 gctggagtcc ctgaaggagg agctgctttg cctcaagaag aaccatgagc aggtgtgtga
4081 cccttggtgt gatgcattga gactttctgg aggtgaattc aggctcatct ggggggaaaa
4141 aacggaggct tccttctgct tgggattgaa gctttgcagg tgagctctgg cttttggtgg
4201 gagattgctt ctcatccaca gcttctggaa gctgctaggc tggtgcaggc agcggtttat
4261 cttcagagga gcacagggaa attactgggg aggatggaaa gtgggagttg agagtttggg
4321 tgaagggcag ttgggggccc tgcaggcggg tcatactcct ctgatgccta caggaagccc
4381 acactctaag gggtcagctg ggagacaagc tccggataga gctggacatt gagcccacca
4441 ttgacctgag tagagttctg ggggagacgt gaggccagta cgaggccatg gtggagacca
4501 atcgccagga tgtggagcag tggttccaag cccaggtgag ggggactgct aagcagtggg
4561 gattggcctc catctgggca ggtaggtgac catgtttctc tatgctccag tctgaaggca
4621 tcagcctgca ggccatgtcc tgctctgagg agctgcagtg ctgccagtca gagatcctgg
4681 agttgagacg ctcggtgaac gccctggagg tggagcttca ggctcagcac acactggtga
4741 gtccctctgc acgcatggga gacccagctt ggctcccact acccatgagt agctctctgg
4801 ggtcagtaca ggcctcgaat accaaccacg gactcagctt aaaccttggt ttcaactctt
4861 ttggaagcac ttccctgtag atgtggatgc tgagtgaatc aacattaact taggtcagag
4921 ggctctgatc ttaaaggtct accatgaagt gtgttagtta ttctggctga agacagctaa
4981 agggagttag attgctctct ggacctggca atgtcttggg gtgtcacaat cttaagaggt
5041 tggagatcca tgatttttaa cttgcttcct cctttctttg atattataga aggactgtct
5101 acagaactcc ctgtgtgaag ccgaggaccg ctaccgcaca gagctggccc agatgcagag
5161 cctcatcaac aatgtggagg aacagctgtc tgagatccgg gctgacctgg agcggcagaa
5221 ccaggagtac caggtgctgc tggatgtgaa ggcccggctg cagaatgaga ttgccacata
5281 ccggaacctt ctggagagtg aggactgcaa gtacgtaccc tgttgtctat gtcaacaccg
5341 tgtgcaaaaa cagataactt ctcttgggaa tgacctaaaa ggagctctgg aggccaggtg
5401 ggggtggcat tgcagatccc atctttggag acaaacttgc taccactagg cctggtgagc
5461 taatgcctgc ctaggcgtag gtgagggtgt acaggagttt tcaggtcatg gcatttgttt
5521 tgctgaccac gttgtgctcc cagttgctgg ctactcccat agagggctaa aatactgaat
5581 gcccagcaca ttcaggtttt gctaaattct ctccaggaga agtattccaa taacgagtat
5641 tctttgtgct catagcattt aaagtattgc taagggcatg tgcactgact ctttcatttt
5701 agttccacaa tagccctgtg aaaagcatca gagggctgat ataccccttt aagcactaag
5761 gaacactatg aggggctgtg tttaaatgga atcagtggct gacatctgga ccattcttgt
5821 tcctctggcc tttctgcctt tctctctgct gtgttccttc catatgggac gtgaccctgg
5881 cctggcacac aggtacactg agttctggcc ccagctccac tgtggactgt gggcacgtca
5941 ttgccccttt caggcttaga gggacctcta aggtctaagg tcctcttttg cactttaatt
6001 ctaaagtgtc tataatatac ttttgtcttt cacatacttc tcatgccaat gtttcaaaca
6061 ccttttttct ctatgcagat ttccctgcaa cccgtgtgca accccagcct tcagcactcc
6121 tagtccagcc cctgcagcct gcgccccctg ctcccgggcc acccatgggc cctgctcatc
6181 aactggatac tgacacactc ctcagcccga ggtgctggga aaggggaggt gtcttcagct
6241 cgttaggctt tgctctgcag gcctgctaac ctgggccttg cctccctggc cagccaggca
6301 ggagactgaa gagagacagt gccactctgt ggataggtgt ttgaatccag cagctcagcc
6361 cctatggctg gatttgtttc ttcccctcaa ggtgtcccaa gtgctccatt ttctctcttc
6421 tgttgcctcc tgatctctct gagatggggc aggcactttt gtttttattt tgctattaaa
6481 cttcgcttct gcagcagaat gagcccagtg cagtccagcc tcagcatctc cgtcccatgc
6541 tgagagcctt gctgggaact ccttgagcca catgcttctg tagacggggg ttgtggctgg
6601 ctcgccagag tggttctggg agatggcaaa gccagtgaag gctagagtta aaaatgggac
6661 tgcggccaaa gtg
//