LOCUS Y00706 3636 bp mRNA linear HUM 28-JUL-1995
DEFINITION Human mRNA for alpha1 chain of basement membrane (type IV)
collagen.
ACCESSION Y00706
VERSION Y00706.1
KEYWORDS collagen; collagen alpha 1 type IV.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3636)
AUTHORS Tryggvason K.
JOURNAL Submitted (17-DEC-1987) to the INSDC. Tryggvason K., University of
Oulu, Biocenter and Dept. of Biochemistry, 90570 Oulu, Finland.
REFERENCE 2
AUTHORS Soininen R., Haka-Risku T., Prockop D.J., Tryggvason K.
TITLE Complete primary structure of the alpha 1-chain of human basement
membrane (type IV) collagen
JOURNAL FEBS Lett. 225(1-2), 188-194(1987).
PUBMED 3691802
FEATURES Location/Qualifiers
source 1..3636
/db_xref="H-InvDB:HIT000325310"
/organism="Homo sapiens"
/mol_type="mRNA"
/clone="HP-1, -2, -3, -11"
/tissue_type="placenta"
/db_xref="taxon:9606"
CDS <1..>3636
/codon_start=1
/note="alpa1-chain"
/db_xref="GOA:P02462"
/db_xref="H-InvDB:HIT000325310.13"
/db_xref="HGNC:HGNC:2202"
/db_xref="InterPro:IPR001442"
/db_xref="InterPro:IPR008160"
/db_xref="InterPro:IPR016187"
/db_xref="InterPro:IPR036954"
/db_xref="PDB:1LI1"
/db_xref="PDB:5NAX"
/db_xref="PDB:5NAY"
/db_xref="PDB:6MPX"
/db_xref="UniProtKB/Swiss-Prot:P02462"
/protein_id="CAA68698.1"
/translation="GQKGERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEPGLPGT
KGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPGFAGNP
GPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVGPPGFTGPP
GPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQK
GEPGFQGMPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGE
KGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPG
QAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPG
PPGDQGPPGIPGQPGFIGEIGEKGQKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPG
AKGDRGLPGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDKGDPGFPGQPG
MPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPPGPPGYGPA
GPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGDRGFP
GTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDMGPPGTPGRPGFNGLPGNPGV
QGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPPGLQGIRGEPG
PPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKG
DKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPWGAPGL
PGEKGDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQI
GPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMG
LPGTPGEKGVPGIPGPQGSPGLPGDKGAKGEKGQAGPPGIGIPGLRGEKGDQGIAGFP
GSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKG
EAGLPGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEV
GFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPGLPGL
PGPMGPPG"
BASE COUNT 870 a 956 c 1247 g 563 t
ORIGIN
1 ggacaaaagg gtgaaagagg cctcccgggg ttacaaggtg tcattgggtt tcctggaatg
61 caaggacctg aggggccaca gggaccacca ggacaaaagg gtgatactgg agaaccagga
121 ctacctggaa caaaagggac aagaggacct ccgggagcat ctggctaccc tggaaaccca
181 ggacttcccg gaattcctgg ccaagacggc ccgccaggcc ccccaggtat tccaggatgc
241 aatggcacaa agggggagag agggccgctc gggcctcctg gcttgcctgg tttcgcagga
301 aaccccggac caccaggctt accagggatg aagggtgatc caggtgagat acttggccat
361 gtgcccggga tgctgttgaa aggtgaaaga ggatttcccg gaatcccagg gactccaggc
421 ccaccaggac tgccagggct tcaaggtcct gttgggcctc caggatttac cggaccacca
481 ggtcccccag gccctcccgg ccctccaggt gaaaagggac aaatgggctt aagttttcaa
541 ggaccaaaag gtgacaaggg tgaccaaggg gtcagtgggc ctccaggagt accaggacaa
601 gctcaagttc aagaaaaagg agacttcgcc accaagggag aaaagggcca aaaaggtgaa
661 cctggatttc aggggatgcc aggggtcgga gagaaaggtg aacccggaaa accaggaccc
721 agaggcaaac ccggaaaaga tggtgacaaa ggggaaaaag ggagtcccgg ttttcctggt
781 gaacccgggt acccaggact cataggccgc cagggcccgc agggagaaaa gggtgaagca
841 ggtcctcctg gcccacctgg aattgttata ggcacaggac ctttgggaga aaaaggagag
901 aggggctacc ctggaactcc ggggccaaga ggagagccag gcccaaaagg tttcccagga
961 ctaccaggcc aacccggacc tccaggcctc cctgtacctg ggcaggctgg tgcccctggc
1021 ttccctggtg aaagaggaga aaaaggtgac cgaggatttc ctggtacatc tctgccagga
1081 ccaagtggaa gagatgggct cccgggtcct cctggttccc ctgggccccc tgggcagcct
1141 ggctacacaa atggaattgt ggaatgtcag cccggacctc caggtgacca gggtcctcct
1201 ggaattccag ggcagccagg atttataggc gaaattggag agaaaggtca aaaaggagag
1261 agttgcctca tctgtgatat agacggatat cgggggcctc ccgggccaca gggacccccg
1321 ggagaaatag gtttcccagg gcagccaggg gccaagggcg acagaggttt gcctggcaga
1381 gatggtgttg caggagtgcc aggccctcaa ggtacaccag ggctgatagg ccagccagga
1441 gccaaggggg agcctggtga gttttatttc gacttgcggc tcaaaggtga caaaggagac
1501 ccaggctttc caggacagcc cggcatgcca gggagagcgg gttctcctgg aagagatggc
1561 catccgggtc ttcctggccc caagggctcg ccgggttctg taggattgaa aggagagcgt
1621 ggcccccctg gaggagttgg attcccaggc agtcgtggtg acaccggccc ccctgggcct
1681 ccaggatatg gtcctgctgg tcccattggt gacaaaggac aagcaggctt tcctggaggc
1741 cctggatccc caggcctgcc aggtccaaag ggtgaaccag gaaaaattgt tcctttacca
1801 ggcccccctg gagcagaagg actgccgggg tccccaggct tcccaggtcc ccaaggagac
1861 cgaggctttc ccggaacccc aggaaggcca ggcctgccag gagagaaggg cgctgtgggc
1921 cagccaggca ttggatttcc agggcccccc ggccccaaag gtgttgacgg cttacctgga
1981 gacatggggc caccggggac tccaggtcgc ccgggattta atggcttacc tgggaaccca
2041 ggtgtgcagg gccagaaggg agagcctgga gttggtctac cgggactcaa aggtttgcca
2101 ggtcttcccg gcattcctgg cacacccggg gagaagggga gcattggggt accaggcgtt
2161 cctggagaac atggagcgat cggaccccct gggcttcagg ggatcagagg tgaaccggga
2221 cctcctggat tgccaggctc cgtggggtct ccaggagttc caggaatagg cccccctgga
2281 gctaggggtc cccctggagg acagggacca ccggggttgt caggccctcc tggaataaaa
2341 ggagagaagg gtttccccgg attccctgga ctggacatgc cgggccctaa aggagataaa
2401 ggggctcaag gactccctgg cataacggga cagtcggggc tccctggcct tcctggacag
2461 cagggggctc ctgggattcc tgggtttcca ggttccaagg gagaaatggg cgtcatgggg
2521 acccccgggc agccgggctc accaggacca tggggtgctc ctggattacc gggtgaaaaa
2581 ggggaccatg gctttccggg ctcctcagga cccaggggag accctggctt gaaaggtgat
2641 aagggggatg tcggtctccc tggcaagcct ggctccatgg ataaggtgga catgggcagc
2701 atgaagggcc agaaaggaga ccaaggagag aaaggacaaa ttggaccaat tggtgagaag
2761 ggatcccgag gagaccctgg gaccccagga gtgcctggaa aggacgggca ggcaggacag
2821 cctgggcagc caggacctaa aggtgatcca ggtataagtg gaaccccagg tgctccagga
2881 cttccgggac caaaaggatc tgttggtgga atgggcttgc caggaacacc tggagagaaa
2941 ggtgtgcctg gcatccctgg cccacaaggt tcacctggct tacctggaga caaaggtgca
3001 aaaggagaga aagggcaggc aggcccacct ggcataggca tcccagggct gcgaggtgaa
3061 aagggagatc aagggatagc gggtttccca ggaagccctg gagagaaggg agaaaaagga
3121 agcattggga tcccaggaat gccagggtcc ccaggcctta aagggtctcc cgggagtgtt
3181 ggctatccag gaagtcctgg gctacctgga gaaaaaggtg acaaaggcct cccaggattg
3241 gatggcatcc ctggtgtcaa aggagaagca ggtcttcctg ggactcctgg ccccacaggc
3301 ccagctggcc agaaagggga gccaggcagt gatggaatcc cggggtcagc aggagagaag
3361 ggtgaaccag gtctaccagg aagaggattc ccagggtttc caggggccaa aggagacaaa
3421 ggttcaaagg gtgaggtggg tttcccagga ttagccggga gcccaggaat tcctggatcc
3481 aaaggagagc aaggattcat gggtcctccg gggccccagg gacagccggg gttaccggga
3541 tccccaggcc atgcaacgga ggggcccaaa ggagaccgcg gacctcaggg ccagcctggc
3601 ctgccaggac ttccgggacc catggggcct ccaggg
//