LOCUS X98833 5914 bp DNA linear HUM 14-NOV-2006
DEFINITION Homo sapiens SALL1 gene, exon 2-3, partial.
ACCESSION X98833
VERSION X98833.1
KEYWORDS SALL1 gene; zinc finger protein.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1
AUTHORS Kohlhase J., Schuh R., Dowe G., Kuehnlein R.P., Jaeckle H.,
Schroeder B., Schulz-Schaeffer W., Kretzschmar H.A., Koehler A.,
Mueller U., Raab-Vetter M., Burkhardt E., Engel W., Stick R.
TITLE Isolation, characterization, and organ-specific expression of two
novel human zinc finger genes related to the Drosophila gene spalt
JOURNAL Genomics 38(3), 291-298(1996).
PUBMED 8975705
REFERENCE 2
AUTHORS Kohlhase J.
JOURNAL Submitted (28-MAY-1996) to the INSDC. J. Kohlhase, Max-Planck-Inst.
f. biophys. Chem., Abt. Molekulare Entwicklungsbiologie, Am
Fassberg, Goettingen, D-37077, FRG
REMARK Revised by [3]
REFERENCE 3
AUTHORS Kohlhase J.
JOURNAL Submitted (29-JUL-1997) to the INSDC. J. Kohlhase, Max-Planck-Inst.
f. biophys. Chem., Abt. Molekulare Entwicklungsbiologie, Am
Fassberg, Goettingen, D-37077, FRG
REMARK Revised by [5]
REFERENCE 4
AUTHORS Kohlhase J., Wischermann A., Reichenbach H., Froster U., Engel W.
TITLE Mutations in the SALL1 putative transcription factor gene cause
Townes-Brocks syndrome
JOURNAL Nat Genet 18, 82-83(1998).
REFERENCE 5 (bases 1 to 5914)
AUTHORS Kohlhase J.
JOURNAL Submitted (05-OCT-1998) to the INSDC. J. Kohlhase, Max-Planck-Inst.
f. biophys. Chem., Abt. Molekulare Entwicklungsbiologie, Am
Fassberg, Goettingen, D-37077, FRG
REFERENCE 6
AUTHORS Kohlhase J., Taschner P.E.M., Burfeind P., Pasche B., Newman B.,
Blanck C., Breuning M.H., ten Kate L.P., Maaswinkel-Mooy P.,
Mitulla B., Seidel J., Kirkpatrick S.J., Pauli R.M.,
Wargowski D.S., Devriendt K., Proesmans W., Gabrielli O.,
Coppa G.V., Wesbyvan-Swaay E., Trembath R.C., Schinzel A.A.,
Reardon W., Seemanova E., Engel W.
TITLE Molecular analysis of SALL1 mutations in Townes-Brocks syndrome
JOURNAL Am. J. Hum. Genet. 64(2), 435-445(1999).
PUBMED 9973281
FEATURES Location/Qualifiers
source 1..5914
/organism="Homo sapiens"
/chromosome="16"
/map="q12.1"
/mol_type="genomic DNA"
/dev_stage="fetus"
/db_xref="taxon:9606"
intron <1..183
/gene="SALL1"
/number=1
primer_bind 69..91
/note="TF0.2"
primer_bind 140..160
/note="TF1"
exon 184..3641
/gene="SALL1"
/number=2
primer_bind 247..266
/note="1S1"
primer_bind 326..347
/note="TR1.2"
primer_bind 327..348
/note="TR1"
primer_bind 444..465
/note="TF1.1"
primer_bind 630..649
/note="1R2"
primer_bind 642..661
/note="1S2"
primer_bind 930..950
/note="TF1.2"
primer_bind 953..972
/note="1R3"
primer_bind 1089..1108
/note="1R4"
primer_bind 1135..1154
/note="1S3"
primer_bind 1268..1289
/note="TR1.1"
primer_bind 1390..1410
/note="TF2"
primer_bind 1483..1502
/note="1R5"
primer_bind 1503..1523
/note="TF2.1"
primer_bind 1629..1649
/note="TR2"
primer_bind 1830..1849
/note="1R6"
primer_bind 1863..1885
/note="1S4"
primer_bind 2071..2090
/note="TR2.1"
primer_bind 2147..2167
/note="TF3"
primer_bind 2189..2211
/note="TR3.1"
primer_bind 2377..2395
/note="TF3.1"
primer_bind 2425..2445
/note="TF3.2"
primer_bind 2503..2523
/note="TR3"
primer_bind 2638..2657
/note="TF3.3"
primer_bind 2657..2677
/note="TR3.2"
primer_bind 2916..2935
/note="1R8"
primer_bind 2957..2975
/note="TF4"
primer_bind 2998..3018
/note="TR4.1"
primer_bind 3203..3224
/note="TF4.1"
primer_bind 3329..3348
/note="TR4"
primer_bind 3406..3425
/note="1S6"
intron 3642..4780
/gene="SALL1"
/number=2
primer_bind 3667..3686
/note="TR5"
primer_bind 3745..3765
/note="TR5.4"
primer_bind 4615..4635
/note="TF5"
exon 4781..>5914
/gene="SALL1"
/number=3
primer_bind 4826..4845
/note="1R9"
primer_bind 4866..4885
/note="1S7"
primer_bind 5077..5096
/note="1R10"
primer_bind 5240..5262
/note="TR5.1"
primer_bind 5270..5289
/note="TR5.6"
BASE COUNT 1521 a 1602 c 1333 g 1458 t
ORIGIN
1 gaattcctcc atacccttac aaattaatta tggatgttct taggtaatat tgattggttt
61 tcaagggcta cagttttgag ttttgcaggt ggaaaaccat tgattagcct tttttttttt
121 aagtcatagg tgactgtgtg tcctggcccc ttttctaatc ctgcaccttt ttgacatttg
181 taggagacac agaaaagggt caaccgagtc gccctactaa gagcaaggat gcccacgtct
241 gtggccggtg ctgtgccgag ttctttgaat tatcagatct tctgctccac aagaagaact
301 gtactaaaaa tcaattagtt ttaatcgtaa atgaaaatcc agcctcccca cccgaaacct
361 tctcccccag cccccctcct gataatcctg atgaacaaat gaatgacaca gttaacaaaa
421 cagatcaagt ggactgcagc gacctttcag aacacaacgg acttgacagg gaagagtcca
481 tggaggtgga ggccccggtt gctaacaaaa gcggcagcgg cacttccagc ggcagccaca
541 gcagtaccgc cccaagcagc agcagcagca gcagcagcag cagcggcggc ggcggcagct
601 cctccacagg tacctcagcg atcacaacct ctctacctca actcggggac ctgacaacac
661 tgggcaactt ctccgtaatc aacagcaacg tcatcatcga gaacctccag agcaccaagg
721 tggcggtggc ccagttctcc caggaagcga ggtgcggcgg ggcctctggg ggcaagctgg
781 ccgtcccagc cctcatggaa caactcctag ctctgcagca gcagcagatc caccagctgc
841 aattgatcga acagattcgt caccaaatat tgctgttggc ttctcagaat gcagacttgc
901 caacatcttc tagtccttct caaggtactt tacgaacatc tgccaacccc ttgtccacgc
961 taagttccca tttatctcag cagctggcag cagcagctgg attggcacag agcctcgcca
1021 gccaatctgc cagcattagt ggtgtgaaac agctaccccc aatccagcta cctcagagca
1081 gttctggcaa caccatcatt ccatccaaca gcggctcttc tcccaatatg aacatattgg
1141 cagcggcagt taccaccccg tcctctgaaa aagtggcttc aagtgctggg gcctcccatg
1201 tcagcaaccc agcggtctca tcatcgtcct caccagcttt tgcaataagc agtttattaa
1261 gtcctgcgtc taatccactt ctacctcagc aagcctccgc taactcggtt ttccccagcc
1321 ctttgcccaa catcggaaca actgcagagg atttaaactc cttgtctgcc ttggcccagc
1381 aaagaaaaag caagccacca aatgtcactg cctttgaagc gaaaagtact tccgatgagg
1441 cattcttcaa acacaagtgc aggttctgcg cgaaggtctt tgggagtgac agtgccttgc
1501 agatccactt gcgttcccat accggagaga ggccattcaa gtgcaacatc tgcgggaaca
1561 ggttctccac caaggggaat ctgaaagtcc actttcagcg ccacaaagag aaataccctc
1621 atatccagat gaacccctat cctgtgcctg agcatttgga caatatcccc acgagtactg
1681 gcatcccata tggcatgtcc atccctccag agaagccagt caccagctgg ctagacacca
1741 aaccagtcct gcctactctg accacttcag tcggcctgcc gttgccccca agcctcccaa
1801 gcctcatacc cttcatcaag acggaagagc cagcccccat ccccatcagc cattctgcca
1861 ccagcccccc aggctcagtc aaaagtgact ccgggggccc tgagtcagcc acaagaaatc
1921 taggtgggct cccagaggaa gccgaagggt ccactctgcc accctctggt ggcaaaagcg
1981 aagagagtgg catggtcacc aactcagtcc cgacggcgag cagtagcgtc ctgagctccc
2041 cagcggcaga ctgcggcccc gcgggcagtg ccaccacctt caccaaccct ttgttgccgc
2101 tcatgtccga gcagttcaag gccaagtttc cttttggggg actcctggac tcagctcagg
2161 catcagagac gtccaagctt cagcaactgg tagaaaacat tgacaagaag gccactgacc
2221 ccaatgagtg catcatctgt caccgggttc tcagctgcca gagcgccttg aaaatgcact
2281 acaggacaca cactggggag aggcccttta agtgtaagat ctgtggccgg gctttcacca
2341 cgaaagggaa tcttaaaacc cactacagtg tccatcgtgc tatgcccccg ctcagagtcc
2401 agcattcctg ccccatctgc cagaagaagt tcacgaacgc tgtggtcctg cagcagcaca
2461 tccgaatgca tatgggaggc cagatcccca acaccccagt ccccgacagc tactctgagt
2521 ccatggagtc tgacacaggt tcctttgatg agaaaaattt tgatgaccta gacaacttct
2581 ctgatgaaaa catggaagac tgtcctgagg gcagcatccc tgatacacct aagtctgcag
2641 acgcctccca agacagctta tcctcttcgc ctttgcccct tgagatgtcg agcatcgctg
2701 ctttggaaaa tcagatgaag atgatcaatg ctggcctggc agagcagcta caggccagcc
2761 tgaagtcagt ggagaatggg tccatcgagg gggatgtcct gaccaatgat tcatcctcag
2821 tgggtggtga catggaaagc caaagtgctg gcagcccagc catctcagag tctacctctt
2881 ccatgcaggc tctgtccccg tccaacagca cgcaggagtt ccacaagtca cccagcattg
2941 aggagaaacc acagagagcg gtcccaagcg agtttgccaa tggtttgtct cccaccccag
3001 tgaatggtgg ggctttggat ttgacatcta gtcacgcaga gaaaatcatc aaagaagatt
3061 ctttggggat cctcttccct tttagagacc ggggtaaatt taaaaacact gcttgtgaca
3121 tttgtggcaa aacatttgct tgtcagagtg ccttggacat tcactataga agtcatacca
3181 aagagagacc atttatttgc acagtttgca atcgtggctt ttccacaaag ggtaatttga
3241 agcagcacat gttgacacat cagatgcgag atctgccatc ccagctcttt gagcccagtt
3301 ccaaccttgg ccccaatcag aactcagcgg tgattcccgc caactcgttg tcatctctca
3361 tcaagacaga ggtcaacggc ttcgtgcatg tttctcctca ggacagtaag gacaccccca
3421 ccagtcacgt cccgtctggg cctctgtctt cctctgccac atccccagtt ctgctccctg
3481 ctctgcccag gagaactccc aagcagcact actgcaacac atgtggcaaa accttctcct
3541 catcgagtgc cctgcagatt cacgagagaa ctcacactgg agagaaaccc tttgcttgca
3601 ctatttgtgg aagagctttc acgactaaag gcaatcttaa ggtaccttgc tctctctgca
3661 ccatacctgc tccatcaacc ctgtcccact gccattgatt atctataatg catgccccca
3721 gagtcatcag cccagatatt cagggagaga gctcttgcaa gggaacctgc tgcacatggt
3781 tgacggggga gaaatggggg agagggtgcc tgggagggtc aggatcatgg cagggacaag
3841 ggcaagctgc agctcactga atgtcagtgc acattgaata atttggtacc taagcgaagc
3901 agcggcctct ctctgttgtc tcgctaagtg caccaaatga attgctttac ctaccaagaa
3961 agacagccta gcgttgccat ggggtattga ttaaagacct ccacgtggcc tgtgtgctgc
4021 ccgtatcact taataattag ggttctcggc gtatgtatct atttttcata actatgcagt
4081 ccagcatggt ttgtttgtct aaaaacaata acgtcactgc tctgctaatg ggtattatga
4141 taattgatta tacagcattt cctactgata tgtgttggaa ataaagcaaa tatgcttaag
4201 ttctagagca acagttgagt gctcttagtg tgtacatttt tctgttgaca gagtatttct
4261 ctggagattg ctcccagtaa tgtgagatga ataattactt tctggctttt ctctccatac
4321 gcaggccctc caatgggcaa tcagggaggg ataccttctc cccatctgaa aaggacattt
4381 atagggtaaa gggtgtcaga tacaatactt accattgcaa tgagagtgga cctaacaatt
4441 ctaaccctga aaggagctat ccgccactgc ctggcttgct tgaggccatt ataagctaaa
4501 tatggttaat aaaaaaagag taagtaaggc atccttgcct tggaagaggg gagacagccc
4561 agggctgcag agaatgaaca cgttattact agacaggagg aatggatggt tcctgttgcc
4621 ttcactgtct gtcacatgat gagaatagac atttaggcca cttgctttgt ggacatttgg
4681 gatatgagtt gagacagatt cagctattaa gcttctctcc ccctcctctt ttttttctct
4741 ctctctctct gtctctctgc ctgccctccc catatctcag gtacacatgg gcactcacat
4801 gtggaatagc acccctgcac gacggggtcg gcggctctct gtggatggcc ccatgacatt
4861 tctaggaggc aatcccgtca agttcccaga aatgttccag aaggatttgg cggcaagatc
4921 aggaagtggg gatccttcca gcttctggaa tcagtatgca gcagcgctct ccaacgggct
4981 ggcgatgaag gccaacgaga tctccgtcat tcagaacggt ggcatccctc caattcctgg
5041 aagcctcggc agtgggaaca gctcacctat tagtgggctg acgggaaacc tggagaggct
5101 ccagaactca gagcccaatg ctcccctggc cggcctggag aaaatggcaa gcagtgagaa
5161 cggaaccaac ttccgcttca cccgcttcgt ggaggacagc aaggagatcg tcacgagtta
5221 aagcagctcg ggctggagac atagcattca ttcctgttca gaatgcgacc tatggtggcc
5281 tcctactcct tgccccccac cccgccccgc cccttccttc tgttccccag atctatgaac
5341 tacaacatta tgaagacatt cttttgtacc ttgttcaact ttagagttct aagaaagctt
5401 atttattagc gatataacct tgctttgcaa acagaatgca agcgttaact ttggtcttct
5461 gtattttgga ctaaatacta attgactaga gtgctgtaaa cttgctgtaa catttatggc
5521 aattgcaagt tgccctgcta ggcagttgta atctggcatt aacttatttt ctatatccag
5581 tttaatatga atctggtgtt gatgcaatgc ctcagtgatg cattagatct ctaataaagt
5641 ctgtatatac atgtacactt tgatcctgct ggaaaatttt atcagcaaac acattgtcta
5701 atctttcaaa acagatttaa ggaaaggact gaaagtacag actgaacagt gtggttcttt
5761 gaaaggtttg gttttttaat ttttattcta aaattcaacc ttttttttgt cgatttaacc
5821 atttccattt tgaactgcta tttgtattgt gctttttact tgagtcgtct tcaatgttaa
5881 taagtttctg tacagtaata agcacgcaga attc
//