LOCUS X61598 1936 bp mRNA linear HUM 18-APR-2005 DEFINITION H.sapiens mRNA for colligin (a collagen-binding protein). ACCESSION X61598 VERSION X61598.1 KEYWORDS collagen-binding protein; colligin. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1936) AUTHORS Clarke E. JOURNAL Submitted (23-SEP-1991) to the INSDC. E. Clarke, The University of Western Ontario, Health Sciences Centre, Faculty of Medicine, Dept of Biochemistry, London Ontario N6A 5C1, CANADA REFERENCE 2 AUTHORS Clarke E., Sandwal B.D. TITLE Cloning of a human collagen-binding protein, and its homology with rat gp46, chick hsp47 and mouse J6 proteins JOURNAL Biochim. Biophys. Acta 1129(2), 246-248(1992). PUBMED 1309665 COMMENT Sequence comparisons reveal that human colligin, gp46, HSP47 and J6 represent the same protein in different cell lines and thus all should be refered to as colligin. FEATURES Location/Qualifiers source 1..1936 /db_xref="H-InvDB:HIT000322464" /organism="Homo sapiens" /mol_type="mRNA" /cell_type="fibroblast" /tissue_type="skin" /db_xref="taxon:9606" CDS 34..1287 /product="colligin" /function="collagen-binding protein" /db_xref="GOA:P50454" /db_xref="H-InvDB:HIT000322464.13" /db_xref="HGNC:HGNC:1546" /db_xref="InterPro:IPR000215" /db_xref="InterPro:IPR023795" /db_xref="InterPro:IPR023796" /db_xref="InterPro:IPR033547" /db_xref="InterPro:IPR033830" /db_xref="InterPro:IPR036186" /db_xref="InterPro:IPR042178" /db_xref="InterPro:IPR042185" /db_xref="UniProtKB/Swiss-Prot:P50454" /protein_id="CAA43795.1" /translation="MRSLLLGTLCLLAVALAAEVKKPVEAAAPGTAEKLSSKATTLAE PSTGLAFSLYQAMAKDQAVENILVSPVVVASSLGLVSLGGKATTASQAKAVLSAEQLR DEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFADDFVRSSKQHYNCEHSKI NFPDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDEKFHHKMV DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQLVEMPLAHKLSSLIILMPHHVEP LERLEKLLTKEQLKIWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKA DLSRMSGKKDLYLASVFHATAFELDTDGNPFDQDIYGREELRSPKLFYADHPFIFLVR DTQSGSLLFIGRLVRLKGDKMRDEL" sig_peptide 34..84 /note="colligin" mat_peptide 85..1284 /product="colligin" /function="collagen-binding protein" misc_feature 1273..1284 /note="C-terminal RDEL sequence" BASE COUNT 424 a 568 c 562 g 382 t ORIGIN 1 ggtcctctgt ggtgcacagc ccacccccca gccatgcgct ctctccttct gggcacctta 61 tgcctcctgg ctgtggccct ggcagccgag gtgaagaaac ctgtagaggc cgcagcccct 121 ggtactgcgg agaagctgag ttccaaggcg accacactgg cagagcccag cacaggcctg 181 gccttcagcc tgtatcaggc aatggccaag gaccaggcag tggagaacat cctggtgtca 241 cccgtggtgg tggcctcgtc gctgggtctc gtgtcgctgg gcggcaaggc gaccacggcg 301 tcgcaggcca aggcagtgct gagcgccgag cagctgcgcg acgaggaggt gcacgccggc 361 ctgggtgagc tgctgcgctc actcagcaac tcgacggcgc gcaacgtgac ctggaagctg 421 ggcagccgac tgtacggacc cagctcagtg agcttcgctg atgacttcgt gcgcagcagc 481 aagcagcact acaactgcga gcactccaag atcaacttcc cggacaagcg cagcgcgctg 541 cagtccatca acgagtgggc cgcgcagacc accgacggca agctgcccga ggtcaccaag 601 gacgtggagc gcacggacgg cgccctgcta gtcaacgcca tgttcttcaa gccacactgg 661 gatgagaaat tccaccacaa gatggtggac aaccgtggct tcatggtgac tcggtcctat 721 actgtgggtg ttacgatgat gcaccggaca ggcctctaca actactacga cgacgagaag 781 gagaagctgc agctggtgga gatgcccctg gctcacaagc tctccagcct catcatcctc 841 atgccccatc acgtggagcc tctcgagcgc cttgaaaagc tgctaaccaa agagcagctg 901 aagatctgga tggggaagat gcagaagaag gctgttgcca tctccttgcc caagggtgtg 961 gtggaggtga cccatgacct gcagaaacac ctggctgggc tgggcctgac tgaggccatt 1021 gacaagaaca aggccgactt atcacgcatg tctggcaaga aggatctgta cctggccagt 1081 gtgttccacg ccaccgcctt tgagttggac acagatggca acccctttga ccaggacatc 1141 tacgggcgcg aggagctgcg cagccccaag ctgttctacg ccgaccaccc cttcatcttc 1201 ctggtgcggg acacccaaag cggctccctg ctattcattg ggcgcctggt ccggctcaag 1261 ggtgacaaga tgcgagacga gttatagggc ctcagggtgc acacaggatg gcaggaggca 1321 tccaaaggct cctgagacac atgggtgcta ttggggttgg gggggaggtg aggtaccagc 1381 cttggatact ccatggaatt cgagctccac ttggacatgg gccccagata ccatgatgct 1441 gagcccggaa actccacatc ctgtgggacc tgggccatag tcattctgcc tgccctgaaa 1501 gtcccagatc aagcctgcct caatcagtat tcatatttat agccaggtac cttctcacct 1561 gtgagaccaa attgagctcg gggggtcagc cagccctctt ctgacactaa aacacctcag 1621 ctgcctcccc agctctatcc caacctctcc caactataaa actaggtgct gcagcctggg 1681 accaggcacc cccagaatga cctggccgca gtgaggcgat tgagaaggag ctcccaggag 1741 gggcttctgg gaagaccctg gtcaagaagc atcgtctggc gttgtgggga tgaacttttt 1801 gttttgtttc ttcctttttt agttcttcaa ggaatggggg gccagggggg caatgagcct 1861 ttgttgctaa tcaaatccgg gacttgtttg tacgtttttt tttctcactg aaaccttttc 1921 cagtgccaaa aaaaaa //