LOCUS X54412 2927 bp mRNA linear HUM 21-OCT-2008
DEFINITION Human mRNA for alpha1(IX) collagen (long form).
ACCESSION X54412
VERSION X54412.1
KEYWORDS collagen; collagen type IX.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2927)
AUTHORS Olsen B.R.
JOURNAL Submitted (28-JUN-1990) to the INSDC. Olsen B.R., Dept. of Anatomy
& Cellular Biology, Harvard Medical School, 220 Long Wood Ave.,
Boston, MA 02115, USA.
REFERENCE 2 (bases 132 to 2927)
AUTHORS Muragaki Y., Kimura T., Ninomiya Y., Olsen B.R.
TITLE The complete primary structure of two distinct forms of human alpha
1 (IX) collagen chains
JOURNAL Eur. J. Biochem. 192(3), 703-708(1990).
PUBMED 2209617
COMMENT Data kindly reviewed (25-NOV-1990) by Olsen B.R.
FEATURES Location/Qualifiers
source 1..2927
/db_xref="H-InvDB:HIT000321892"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
CDS 132..2927
/note="alpha1(IX) collagen precursor"
/db_xref="GOA:P20849"
/db_xref="H-InvDB:HIT000321892.12"
/db_xref="HGNC:HGNC:2217"
/db_xref="InterPro:IPR001791"
/db_xref="InterPro:IPR008160"
/db_xref="InterPro:IPR013320"
/db_xref="PDB:2UUR"
/db_xref="PDB:5CTD"
/db_xref="PDB:5CTI"
/db_xref="PDB:5CVA"
/db_xref="PDB:5CVB"
/db_xref="UniProtKB/Swiss-Prot:P20849"
/protein_id="CAA38276.1"
/translation="MKTCWKIPVFFFVCSFLEPWASAAVKRRPRFPVNSNSNGGNELC
PKIRIGQDDLPGFDLISQFQVDKAASRRAIQRVVGSATLQVAYKLGNNVDFRIPTRNL
YPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSSGKEQVGIKINGQTQSVVFSYKGL
DGSLQTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLPIKPRGPIDIDGFA
VLGKLADNPQVSVPFELQWMLIHCDPLRPRRETCHELPARITPSQTTDERGPPGEQGP
PGASGPPGVPGIDGIDGDRGPKGPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSP
GSIGSKGQKGEPGVPGSRGFPGRGIPGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGP
PGPPGPRGTIGFHDGDPLCPNACPPGRSGYPGLPGMRGHKGAKGEIGEPGRQGHKGEE
GDQGELGEVGAQGPPGAQGLRGITGLVGDKGEKGARGLDGEPGPQGLPGAPGDQGQRG
PPGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGEPGKPGPPGD
AGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP
GSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPGPKGEQGASG
EEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPEGSRGLPGVEGPRGPPGPRGVQGE
QGATGLPGVQGPPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPP
GPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGA
IGLPGDPGPASYGKNGRDGERGPPGLAGIPGVPGPPGPPGLPGFCEPASCTMQLVSEH
LTKGLTLERLTAAWLSA"
sig_peptide 132..200
/note="signal peptide"
mat_peptide 201..2924
/note="mature alpha1(IX) collagen"
BASE COUNT 697 a 724 c 911 g 595 t
ORIGIN
1 gaattcccca aggctgggcc cagaacacat agtcctaggg taacagtgaa ggggtcgtga
61 ggggacagtg actcccttcc aaccccttct tcatagggac tgttggcaaa caaagaaaat
121 caactgggaa aatgaagacc tgctggaaaa ttccagtttt cttctttgtg tgcagtttcc
181 tggaaccctg ggcatctgca gctgtcaagc gtcgccccag attccctgtc aattccaatt
241 ctaatggtgg aaatgaactc tgtccaaaga tcaggattgg ccaagatgac ttaccagggt
301 ttgatctgat ctctcagttc caggtagata aagcagcatc tagaagagct atccagagag
361 tagtgggatc agctacattg caggtggctt acaagttggg aaataatgta gacttcagga
421 ttccaactag gaatttatat cccagtggac tgcctgaaga atactccttc ttgacgacgt
481 ttcgaatgac tggaagcact ctcaaaaaga actggaacat ttggcagatt caggattcct
541 ctgggaagga gcaagttggc ataaagatta atggccaaac acaatctgtt gtattttcat
601 acaagggact ggatggaagt ctccaaacag cagccttttc gaatttgtcc tccttgtttg
661 attcccagtg gcataagatc atgattggcg tggagaggag tagtgctact ctttttgttg
721 actgcaacag gattgaatct ttacctataa agccaagagg cccaattgac attgatggct
781 ttgctgtgct gggaaaactt gcagataatc ctcaagtttc tgttccattt gaacttcaat
841 ggatgctgat ccattgtgac cccctgcggc ccaggagaga aacttgccat gagctgccag
901 ccagaataac gcccagccag accaccgacg agagaggtcc cccgggtgag cagggtcctc
961 ccggggcctc cggcccccct ggagttccag gcatcgatgg catcgacggt gaccgaggtc
1021 ctaagggccc cccgggcccc ccgggtcctg caggtgaacc gggaaagcca ggagctccag
1081 gcaagcctgg cacacctggc gctgatggat taacaggacc tgatggatcc cctggctcca
1141 ttgggtcaaa gggacaaaaa ggagaacctg gtgtgcctgg atcgcgtgga tttccaggcc
1201 gtggtattcc tggaccccct ggtcctcctg ggacagcagg actccctgga gagcttggcc
1261 gtgtaggacc tgttggtgac cctgggagaa gaggaccacc tggcccccct ggccccccag
1321 gacccagagg aacaattggc tttcatgatg gagatccatt gtgtcccaat gcctgtccac
1381 caggtcgctc aggatatcca ggcctaccag gcatgagggg tcataaaggg gctaaaggag
1441 aaattggtga accaggaaga caaggacaca agggtgaaga aggtgaccag ggagaactcg
1501 gagaagttgg agctcaagga cctccaggag cccagggttt gcgaggcatc accggcttag
1561 ttggggacaa aggggaaaaa ggtgctcggg gcttagatgg tgaacctggg cctcagggtc
1621 ttcctggtgc acctggtgat caaggacagc gaggacctcc aggagaagca ggtcccaaag
1681 gagatagagg ggctgaaggt gctagaggaa ttcctggtct ccctgggccc aaaggagaca
1741 cgggtttgcc aggtgtggat ggccgtgatg ggatccctgg aatgcctgga acaaagggtg
1801 aaccaggaaa acctgggcct cctggtgatg caggattgca ggggttacca ggtgtacctg
1861 gaattcctgg tgcaaagggt gttgctggtg aaaagggtag cacaggtgct ccagggaagc
1921 ctggtcagat gggaaattca ggcaaaccgg gccaacaggg gcctccagga gaggtgggac
1981 cccgaggacc ccaggggctt cctggcagta gaggagaatt aggaccagtg ggatccccag
2041 gcctaccagg taaactgggt tctctgggta gccctggcct ccctggcttg cctgggcccc
2101 ctggacttcc tggaatgaaa ggtgacaggg gtgtagtcgg tgaaccgggt ccaaagggtg
2161 aacagggtgc ctctggtgaa gaaggtgaag caggagaaag gggggaactt ggagatatag
2221 gattacctgg cccaaaggga tctgcaggta atcctgggga acctggcttg agagggcctg
2281 agggaagtcg ggggcttcct ggagtggaag gaccaagagg accacctgga ccccggggtg
2341 tgcagggaga acagggtgcc accggcctgc ctggtgtcca gggccctccg ggtagagcac
2401 cgacagatca gcacattaag caggtttgca tgagagtcat acaagaacat tttgctgaga
2461 tggctgccag tcttaagcgt ccagactcag gtgccactgg gcttcctgga aggcctggcc
2521 ctcctggtcc ccccggccct cctggagaga atggtttccc aggccagatg ggaattcgtg
2581 gccttccggg cattaagggt ccccctggtg ctcttggttt gaggggacct aaaggtgact
2641 tgggagaaaa gggggagcgt ggccctccag gaagaggtcc caacggtttg ccaggagcta
2701 taggtctccc aggtgaccca ggccctgcca gctatgggaa aaatggccga gacggtgagc
2761 gaggcccccc agggctggca ggaattcctg gagtgcctgg acccccggga cctcctgggc
2821 ttcccggttt ctgtgagcca gcctcctgca ccatgcagct ggtcagcgag catttaacaa
2881 agggcctgac ccttgaaagg cttactgctg catggctgtc tgcatga
//