LOCUS X15998 8224 bp mRNA linear HUM 07-OCT-2008 DEFINITION H.sapiens mRNA for the chondroitin sulphate proteoglycan versican, V1 splice-variant; precursor peptide. ACCESSION X15998 X16626 VERSION X15998.1 KEYWORDS chondroitin sulfate proteoglycan; chondroitin sulfate proteoglycan core protein; glycoprotein; proteoglycan; transmembrane glycoprotein; versican. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 8224) AUTHORS Zimmermann D.R. JOURNAL Submitted (02-AUG-1989) to the INSDC. Zimmermann D.R., La Jolla Cancer Research Foundation, 10901 North Torrey Pines Rd, La Jolla CA92037, U S A. REFERENCE 2 (bases 1 to 8224) AUTHORS Zimmermann D.R., Ruoslahti E. TITLE Multiple domains of the large fibroblast proteoglycan, versican JOURNAL EMBO J. 8(10), 2975-2981(1989). PUBMED 2583089 COMMENT see <J02814> for overlapping sequence FEATURES Location/Qualifiers source 1..8224 /db_xref="H-InvDB:HIT000321534" /organism="Homo sapiens" /mol_type="mRNA" /clone="A-F,1A,4A,2B." /cell_type="fibroblast" /tissue_type="placenta" /db_xref="taxon:9606" CDS 267..7496 /note="precursor peptide (AA -20 to 2389)" /db_xref="GOA:P13611" /db_xref="H-InvDB:HIT000321534.13" /db_xref="HGNC:HGNC:2464" /db_xref="InterPro:IPR000152" /db_xref="InterPro:IPR000436" /db_xref="InterPro:IPR000538" /db_xref="InterPro:IPR000742" /db_xref="InterPro:IPR001304" /db_xref="InterPro:IPR001881" /db_xref="InterPro:IPR003599" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR013032" /db_xref="InterPro:IPR013106" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR016186" /db_xref="InterPro:IPR016187" /db_xref="InterPro:IPR018097" /db_xref="InterPro:IPR018378" /db_xref="InterPro:IPR033987" /db_xref="InterPro:IPR035976" /db_xref="InterPro:IPR036179" /db_xref="UniProtKB/Swiss-Prot:P13611" /protein_id="CAA34128.1" /translation="MFINIKSILWMCSTLIVTHALHKVKVGKSPPVRGSLSGKVSLPC HFSTMPTLPPSYNTSEFLRIKWSKIEVDKNGKDLKETTVLVAQNGNIKIGQDYKGRVS VPTHPEAVGDASLTVVKLLASDAGLYRCDVMYGIEDTQDTVSLTVDGVVFHYRAATSR YTLNFEAAQKACLDVGAVIATPEQLFAAYEDGFEQCDAGWLADQTVRYPIRAPRVGCY GDKMGKAGVRTYGFRSPQETYDVYCYVDHLDGDVFHLTVPSKFTFEEAAKECENQDAR LATVGELQAAWRNGFDQCDYGWLSDASVRHPVTVARAQCGGGLLGVRTLYRFENQTGF PPPDSRFDAYCFKRRMSDLSVIGHPIDSESKEDEPCSEETDPVHDLMAEILPEFPDII EIDLYHSEENEEEEEECANATDVTTTPSVQYINGKHLVTTVPKDPEAAEARRGQFESV APSQNFSDSSESDTHPFVIAKTELSTAVQPNESTETTESLEVTWKPETYPETSEHFSG GEPDVFPTVPFHEEFESGTAKKGAESVTERDTEVGHQAHEHTEPVSLFPEESSGEIAI DQESQKIAFARATEVTFGEEVEKSTSVTYTPTIVPSSASAYVSEEEAVTLIGNPWPDD LLSTKESWVEATPRQVVELSGSSSIPITEGSGEAEEDEDTMFTMVTDLSQRNTTDTLI TLDTSRIITESFFEVPATTIYPVSEQPSAKVVPTKFVSETDTSEWISSTTVEEKKRKE EEGTTGTASTFEVYSSTQRSDQLILPFELESPNVATSSDSGTRKSFMSLTTPTQSERE MTDSTPVFTETNTLENLGAQTTEHSSIHQPGVQEGLTTLPRSPASVFMEQGSGEAAAD PETTTVSSFSLNVEYAIQAEKEVAGTLSPHVETTFSTEPTGLVLSTVMDRVVAENITQ TSREIVISERLGEPNYGAEIRGFSTGFPLEEDFSGDFREYSTVSHPIAKEETVMMEGS GDAAFRDTQTSPSTVPTSVHISHISDSEGPSSTMVSTSAFPWEEFTSSAEGSGEQLVT VSSSVVPVLPSAVQKFSGTASSIIDEGLGEVGTVNEIDRRSTILPTAEVEGTKAPVEK EEVKVSGTVSTNFPQTIEPAKLWSRQEVNPVRQEIESETTSEEQIQEEKSFESPQNSP ATEQTIFDSQTFTETELKTTDYSVLTTKKTYSDDKEMKEEDTSLVNMSTPDPDANGLE SYTTLPEATEKSHFFLATALVTESIPAEHVVTDSPIKKEESTKHFPKGMRPTIQESDT ELLFSGLGSGEEVLPTLPTESVNFTEVEQINNTLYPHTSQVESTSSDKIEDFNRMENV AKEVGPLVSQTDIFEGSGSVTSTTLIEILSDTGAEGPTVAPLPFSTDIGHPQNQTVRW AEEIQTSRPQTITEQDSNKNSSTAEINETTTSSTDFLARAYGFEMAKEFVTSAPKPSD LYYEPSGEGSGEVDIVDSFHTSATTQATRQESSTTFVSDGSLEKHPEVPSAKAVTADG FPTVSVMLPLHSEQNKSSPDPTSTLSNTVSYERSTDGSFQDRFREFEDSTLKPNRKKP TENIIIDLDKEDKDLILTITESTILEILPELTSDKNTIIDIDHTKPVYEDILGMQTDI DTEVPSEPHDSNDESNDDSTQVQEIYEAAVNLSLTEETFEGSADVLASYTQATHDESM TYEDRSQLDHMGFHFTTGIPAPSTETELDVLLPTATSLPIPRKSATVIPEIEGIKAEA KALDDMFESSTLSDGQAIADQSEIIPTLGQFERTQEEYEDKKHAGPSFQPEFSSGAEE ALVDHTPYLSIATTHLMDQSVTEVPDVMEGSNPPYYTDTTLAVSTFAKLSSQTPSSPL TIYSGSEASGHTEIPQPSALPGIDVGSSVMSPQDSFKEIHVNIEATFKPSSEEYLHIT EPPSLSPDTKLEPSEDDGKPELLEEMEASPTELIAVEGTEILQDFQNKTDGQVSGEAI KMFPTIKTPEAGTVITTADEIELEGATQWPHSTSASATYGVEAGVVPWLSPQTSERPT LSSSPEINPETQAALIRGQDSTIAASEQQVAARILDSNDQATVNPVEFNTEVATPPFS LLETSNETDFLIGINEESVEGTAIYLPGPDRCKMNPCLNGGTCYPTETSYVCTCVPGY SGDQCELDFDECHSNPCRNGATCVDGFNTFRCLCLPSYVGALCEQDTETCDYGWHKFQ GQCYKYFAHRRTWDAAERECRLQGAHLTSILSHEEQMFVNRVGHDYQWIGLNDKMFEH DFRWTDGSTLQYENWRPNQPDSFFSAGEDCVVIIWHENGQWNDVPCNYHLTYTCKKGT VACGQPPVVENAKTFGKMKPRYEINSLIRYHCKDGFIQRHLPTIRCLGNGRWAIPKIT CMNPSAYQRTYSMKYFKNSSSAKDNSINTSKHDHRWSRRWQESRR" sig_peptide 267..326 /note="signal peptide (AA -20 to -1)" mat_peptide 327..7493 /note="mature versican (AA 1-2389)" variation 1378 /replace="t" /note="agt (S) is att (T) in clone E" BASE COUNT 2524 a 1842 c 1797 g 2061 t ORIGIN 1 gctgccccga gcctttctgg ggaagaactc caggcgtgcg gacgcaacag ccgagaacat 61 taggtgttgt ggacaggagc tgggaccaag atcttcggcc agccccgcat cctcccgcat 121 cttccagcac cgtcccgcac cctccgcatc cttccccggg ccaccacgct tcctatgtga 181 cccgcctggg caacgccgaa cccagtcgcg cagcgctgca gtgaattttc cccccaaact 241 gcaataagcc gccttccaag gccaagatgt tcataaatat aaagagcatc ttatggatgt 301 gttcaacctt aatagtaacc catgcgctac ataaagtcaa agtgggaaaa agcccaccgg 361 tgaggggctc cctctctgga aaagtcagcc taccttgtca tttttcaacg atgcctactt 421 tgccacccag ttacaacacc agtgaatttc tccgcatcaa atggtctaag attgaagtgg 481 acaaaaatgg aaaagatttg aaagagacta ctgtccttgt ggcccaaaat ggaaatatca 541 agattggtca ggactacaaa gggagagtgt ctgtgcccac acatcccgag gctgtgggcg 601 atgcctccct cactgtggtc aagctgctgg caagtgatgc gggtctttac cgctgtgacg 661 tcatgtacgg gattgaagac acacaagaca cggtgtcact gactgtggat ggggttgtgt 721 ttcactacag ggcggcaacc agcaggtaca cactgaattt tgaggctgct cagaaggctt 781 gtttggacgt tggggcagtc atagcaactc cagagcagct ctttgctgcc tatgaagatg 841 gatttgagca gtgtgacgca ggctggctgg ctgatcagac tgtcagatat cccatccggg 901 ctcccagagt aggctgttat ggagataaga tgggaaaggc aggagtcagg acttatggat 961 tccgttctcc ccaggaaact tacgatgtgt attgttatgt ggatcatctg gatggtgatg 1021 tgttccacct cactgtcccc agtaaattca ccttcgagga ggctgcaaaa gagtgtgaaa 1081 accaggatgc caggctggca acagtggggg aactccaggc ggcatggagg aacggctttg 1141 accagtgcga ttacgggtgg ctgtcggatg ccagcgtgcg ccaccctgtg actgtggcca 1201 gggcccagtg tggaggtggt ctacttgggg tgagaaccct gtatcgtttt gagaaccaga 1261 caggcttccc tccccctgat agcagatttg atgcctactg ctttaaacgt cgaatgagtg 1321 atttgagtgt aattggtcat ccaatagatt cagaatctaa agaagatgaa ccttgtagtg 1381 aagaaacaga tccagtgcat gatctaatgg ctgaaatttt acctgaattc cctgacataa 1441 ttgaaataga cctataccac agtgaagaaa atgaagaaga agaagaagag tgtgcaaatg 1501 ctactgatgt gacaaccacc ccatctgtgc agtacataaa tgggaagcat ctcgttacca 1561 ctgtgcccaa ggacccagaa gctgcagaag ctaggcgtgg ccagtttgaa agtgttgcac 1621 cttctcagaa tttctcggac agctctgaaa gtgatactca tccatttgta atagccaaaa 1681 cggaattgtc tactgctgtg caacctaatg aatctacaga aacaactgag tctcttgaag 1741 ttacatggaa gcctgagact taccctgaaa catcagaaca tttttcaggt ggtgagcctg 1801 atgttttccc cacagtccca ttccatgagg aatttgaaag tggaacagcc aaaaaagggg 1861 cagaatcagt cacagagaga gatactgaag ttggtcatca ggcacatgaa catactgaac 1921 ctgtatctct gtttcctgaa gagtcttcag gagagattgc cattgaccaa gaatctcaga 1981 aaatagcctt tgcaagggct acagaagtaa catttggtga agaggtagaa aaaagtactt 2041 ctgtcacata cactcccact atagttccaa gttctgcatc agcatatgtt tcagaggaag 2101 aagcagttac cctaatagga aatccttggc cagatgacct gttgtctacc aaagaaagct 2161 gggtagaagc aactcctaga caagttgtag agctctcagg gagttcttcg attccaatta 2221 cagaaggctc tggagaagca gaagaagatg aagatacaat gttcaccatg gtaactgatt 2281 tatcacagag aaatactact gatacactca ttactttaga cactagcagg ataatcacag 2341 aaagcttttt tgaggttcct gcaaccacca tttatccagt ttctgaacaa ccttctgcaa 2401 aagtggtgcc taccaagttt gtaagtgaaa cagacacttc tgagtggatt tccagtacca 2461 ctgttgagga aaagaaaagg aaggaggagg agggaactac aggtacggct tctacatttg 2521 aggtatattc atctacacag agatcggatc aattaatttt accctttgaa ttagaaagtc 2581 caaatgtagc tacatctagt gattcaggta ccaggaaaag ttttatgtcc ttgacaacac 2641 caacacagtc tgaaagggaa atgacagatt ctactcctgt ctttacagaa acaaatacat 2701 tagaaaattt gggggcacag accactgagc acagcagtat ccatcaacct ggggttcagg 2761 aagggctgac cactctccca cgtagtcctg cctctgtctt tatggagcag ggctctggag 2821 aagctgctgc cgacccagaa accaccactg tttcttcatt ttcattaaac gtagagtatg 2881 caattcaagc cgaaaaggaa gtagctggca ctttgtctcc gcatgtggaa actacattct 2941 ccactgagcc aacaggactg gttttgagta cagtaatgga cagagtagtt gctgaaaata 3001 taacccaaac atccagggaa atagtgattt cagagcgatt aggagaacca aattatgggg 3061 cagaaataag gggcttttcc acaggttttc ctttggagga agatttcagt ggtgacttta 3121 gagaatactc aacagtgtct catcccatag caaaagaaga aacggtaatg atggaaggct 3181 ctggagatgc agcatttagg gacacccaga cttcaccatc tacagtacct acttcagttc 3241 acatcagtca catatctgac tcagaaggac ccagtagcac catggtcagc acttcagcct 3301 tcccctggga agagtttaca tcctcagctg agggctcagg tgagcaactg gtcacagtca 3361 gcagctctgt tgttccagtg cttcccagtg ctgtgcaaaa gttttctggt acagcttcct 3421 ccattatcga cgaaggattg ggagaagtgg gtactgtcaa tgaaattgat agaagatcca 3481 ccattttacc aacagcagaa gtggaaggta cgaaagctcc agtagagaag gaggaagtaa 3541 aggtcagtgg cacagtttca acaaactttc cccaaactat agagccagcc aaattatggt 3601 ctaggcaaga agtcaaccct gtaagacaag aaattgaaag tgaaacaaca tcagaggaac 3661 aaattcaaga agaaaagtca tttgaatccc ctcaaaactc tcctgcaaca gaacaaacaa 3721 tctttgattc acagacattt actgaaactg aactcaaaac cacagattat tctgtactaa 3781 caacaaagaa aacttacagt gatgataaag aaatgaagga ggaagacact tctttagtta 3841 acatgtctac tccagatcca gatgcaaatg gcttggaatc ttacacaact ctccctgaag 3901 ctactgaaaa gtcacatttt ttcttagcta ctgcattagt aactgaatct ataccagctg 3961 aacatgtagt cacagattca ccaatcaaaa aggaagaaag tacaaaacat tttccgaaag 4021 gcatgagacc aacaattcaa gagtcagata ctgagctctt attctctgga ctgggatcag 4081 gagaagaagt tttacctact ctaccaacag agtcagtgaa ttttactgaa gtggaacaaa 4141 tcaataacac attatatccc cacacttctc aagtggaaag tacctcaagt gacaaaattg 4201 aagactttaa cagaatggaa aatgtggcaa aagaagttgg accactcgta tctcaaacag 4261 acatctttga aggtagtggg tcagtaacca gcacaacatt aatagaaatt ttaagtgaca 4321 ctggagcaga aggacccacg gtggcacctc tccctttctc cacggacatc ggacatcctc 4381 aaaatcagac tgtcaggtgg gcagaagaaa tccagactag tagaccacaa accataactg 4441 aacaagactc taacaagaat tcttcaacag cagaaattaa cgaaacaaca acctcatcta 4501 ctgattttct ggctagagct tatggttttg aaatggccaa agaatttgtt acatcagcac 4561 caaaaccatc tgacttgtat tatgaacctt ctggagaagg atctggagaa gtggatattg 4621 ttgattcatt tcacacttct gcaactactc aggcaaccag acaagaaagc agcaccacat 4681 ttgtttctga tgggtccctg gaaaaacatc ctgaggtgcc aagcgctaaa gctgttactg 4741 ctgatggatt cccaacagtt tcagtgatgc tgcctcttca ttcagagcag aacaaaagct 4801 cccctgatcc aactagcaca ctgtcaaata cagtgtcata tgagaggtcc acagacggta 4861 gtttccaaga ccgtttcagg gaattcgagg attccacctt aaaacctaac agaaaaaaac 4921 ccactgaaaa tattatcata gacctggaca aagaggacaa ggatttaata ttgacaatta 4981 cagagagtac catccttgaa attctacctg agctgacatc ggataaaaat actatcatag 5041 atattgatca tactaaacct gtgtatgaag acattcttgg aatgcaaaca gatatagata 5101 cagaggtacc atcagaacca catgacagta atgatgaaag taatgatgac agcactcaag 5161 ttcaagagat ctatgaggca gctgtcaacc tttctttaac tgaggaaaca tttgagggct 5221 ctgctgatgt tctggctagc tacactcagg caacacatga tgaatcaatg acttatgaag 5281 atagaagcca actagatcac atgggctttc acttcacaac tgggatccct gctcctagca 5341 cagaaacaga attagacgtt ttacttccca cggcaacatc cctgccaatt cctcgtaagt 5401 ctgccacagt tattccagag attgaaggaa taaaagctga agcaaaagcc ctggatgaca 5461 tgtttgaatc aagcactttg tctgatggtc aagctattgc agaccaaagt gaaataatac 5521 caacattggg ccaatttgaa aggactcagg aggagtatga agacaaaaaa catgctggtc 5581 cttcttttca gccagaattc tcttcaggag ctgaggaggc attagtagac catactccct 5641 atctaagtat tgctactacc caccttatgg atcagagtgt aacagaggtg cctgatgtga 5701 tggaaggatc caatccccca tattacactg atacaacatt agcagtttca acatttgcga 5761 agttgtcttc tcagacacca tcatctcccc tcactatcta ctcaggcagt gaagcctctg 5821 gacacacaga gatcccccag cccagtgctc tgccaggaat agacgtcggc tcatctgtaa 5881 tgtccccaca ggattctttt aaggaaattc atgtaaatat tgaagcaact ttcaaaccat 5941 caagtgagga ataccttcac ataactgagc ctccctcttt atctcctgac acaaaattag 6001 aaccttcaga agatgatggt aaacctgagt tattagaaga aatggaagct tctcccacag 6061 aacttattgc tgtggaagga actgagattc tccaagattt ccaaaacaaa accgatggtc 6121 aagtttctgg agaagcaatc aagatgtttc ccaccattaa aacacctgag gctggaactg 6181 ttattacaac tgccgatgaa attgaattag aaggtgctac acagtggcca cactctactt 6241 ctgcttctgc cacctatggg gtcgaggcag gtgtggtgcc ttggctaagt ccacagactt 6301 ctgagaggcc cacgctttct tcttctccag aaataaaccc tgaaactcaa gcagctttaa 6361 tcagagggca ggattccacg atagcagcat cagaacagca agtggcagcg agaattcttg 6421 attccaatga tcaggcaaca gtaaaccctg tggaatttaa tactgaggtt gcaacaccac 6481 cattttccct tctggagact tctaatgaaa cagatttcct gattggcatt aatgaagagt 6541 cagtggaagg cacggcaatc tatttaccag gacctgatcg ctgcaaaatg aacccgtgcc 6601 ttaacggagg cacctgttat cctactgaaa cttcctacgt atgcacctgt gtgccaggat 6661 acagcggaga ccagtgtgaa cttgattttg atgaatgtca ctctaatccc tgtcgtaatg 6721 gagccacttg tgttgatggt tttaacacat tcaggtgcct ctgccttcca agttatgttg 6781 gtgcactttg tgagcaagat accgagacat gtgactatgg ctggcacaaa ttccaagggc 6841 agtgctacaa atactttgcc catcgacgca catgggatgc agctgaacgg gaatgccgtc 6901 tgcagggtgc ccatctcaca agcatcctgt ctcacgaaga acaaatgttt gttaatcgtg 6961 tgggccatga ttatcagtgg ataggcctca atgacaagat gtttgagcat gacttccgtt 7021 ggactgatgg cagcacactg caatacgaga attggagacc caaccagcca gacagcttct 7081 tttctgctgg agaagactgt gttgtaatca tttggcatga gaatggccag tggaatgatg 7141 ttccctgcaa ttaccatctc acctatacgt gcaagaaagg aacagttgct tgcggccagc 7201 cccctgttgt agaaaatgcc aagacctttg gaaagatgaa acctcgttat gaaatcaact 7261 ccctgattag ataccactgc aaagatggtt tcattcaacg tcaccttcca actatccggt 7321 gcttaggaaa tggaagatgg gctataccta aaattacctg catgaaccca tctgcatacc 7381 aaaggactta ttctatgaaa tactttaaaa attcctcatc agcaaaggac aattcaataa 7441 atacatccaa acatgatcat cgttggagcc ggaggtggca ggagtcgagg cgctgatccc 7501 taaaatggcg aacatgtgtt ttcatcattt cagccaaagt cctaacttcc tgtgcctttc 7561 ctatcacctc gagaagtaat tatcagttgg tttggatttt tggaccaccg ttcagtcatt 7621 ttgggttgcc gtgctcccaa aacattttaa atgaaagtat tggcattcaa aaagacagca 7681 gacaaaatga aagaaaatga gagcagaaag taagcatttc cagcctatct aatttcttta 7741 gttttctatt tgcctccagt gcagtccatt tcctaatgta taccagccta ctgtactatt 7801 taaaatgctc aatttcagca ccgatggcca tgtaaataag atgatttaat gttgatttta 7861 atcctgtata taaaataaaa agtcacaatg agtttgggca tatttaatga tgattatgga 7921 gccttagagg tctttaatca ttggttcggc tgcttttatg tagtttaggc tggaaatggt 7981 ttcacttgct ctttgactgt cagcaagact gaagatggct tttcctggac agctagaaaa 8041 cacaaaatct tgtaggtcat tgcacctatc tcagccatag gtgcagtttg cttctacatg 8101 atgctaaagg ctgcgaatgg gatcctgatg gaactaagga ctccaatgtc gaactcttct 8161 ttgctgcatt cctttttctt cacttacaag aaaggcctga atggaggact tttctgtaac 8221 cagg //