LOCUS X15217 2875 bp mRNA linear HUM 18-APR-2005
DEFINITION Human sno oncogene mRNA for snoA protein, ski-related.
ACCESSION X15217
VERSION X15217.1
KEYWORDS alternative splicing; Alu repetitive sequence; oncogene; repetitive
sequence; sno oncogene.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2875)
AUTHORS Nomura N.
JOURNAL Submitted (08-MAY-1989) to the INSDC. Nomura N., Molecular Oncology
Laboratory, Nippon Medical School, Sakuragi , 1-10-19 Uenosakuragi
Taito-ku, Tokyo 110, JAPAN.
REFERENCE 2 (bases 1 to 2875)
AUTHORS Nomura N., Sasamoto S., Ishii S., Matsui M., Ishizaki R.
TITLE Isolation of human cDNA clones of ski and the ski-related gene, sno
JOURNAL Nucleic Acids Res. 17(14), 5489-5500(1989).
PUBMED 2762147
COMMENT see x15219 for snoN cDNA.
Data kindly reviewed (15-SEP-1989) by Nomura N.
FEATURES Location/Qualifiers
source 1..2875
/db_xref="H-InvDB:HIT000321492"
/organism="Homo sapiens"
/mol_type="mRNA"
/cell_type="endothelial cells."
/tissue_type="umbilicord vein"
/db_xref="taxon:9606"
variation 302..302
/note="g is a in variant clones"
CDS 710..1957
/note="snoA protein (AA 1 - 415)"
/db_xref="GOA:P12757"
/db_xref="H-InvDB:HIT000321492.13"
/db_xref="HGNC:HGNC:10897"
/db_xref="InterPro:IPR003380"
/db_xref="InterPro:IPR009061"
/db_xref="InterPro:IPR010919"
/db_xref="InterPro:IPR014890"
/db_xref="InterPro:IPR023216"
/db_xref="InterPro:IPR028373"
/db_xref="InterPro:IPR037000"
/db_xref="PDB:3EQ5"
/db_xref="PDB:5C4V"
/db_xref="UniProtKB/Swiss-Prot:P12757"
/protein_id="CAA33287.1"
/translation="MENLQTNFSLVQGSTKKLNGMGDDGSPPAKKMITDIHVNGKTIN
KVPTVKKEHLDDYGEAPVETDGEHVKRTCTSVPETLHLNPSLKHTLAQFHLSSQSSLG
GPAAFSARHSQESMSPTVFLPLPSPQVLPGPLLIPSDSSTELTQTVLEGESISCFQVG
GEKRLCLPQVLNSVLREFTLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSC
GLITLTDAQRLCNALLRPRTFPQNGSVLPAKSSLAQLKETGSAFEVEHECLGKCQGLF
APQFYVQPDAPCIQCLECCGMFAPQTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQK
YLGTPEEKKLKIILEEMKEKFSMRSGKRNQSKASFLYQFLIMVMVYFEMKILCLVCNL
TCMLNIAHATTTKYRLIYLYCSF"
misc_feature 1806..1807
/note="alternative splicing point"
misc_feature 2131..2294
/note="Alu repeat"
polyA_site 2590..2590
/note="3' end of variant clone with 10 additional A
residues"
BASE COUNT 847 a 563 c 598 g 867 t
ORIGIN
1 ggtttcaaat tggccctttg gcctctggag caaattcaaa tgtaactctt ccccaatccc
61 ccttctcttc ttccagatta attaaaagaa gaatgaacta taatccttga agataactgg
121 gcaatttttt aagtcggagg ctgttcttac tggtgtgagg atttacacac gtcttcagtt
181 tttcagcaca gaccagcaga ccatcatttt tagaggaaat actccctctg ccctcctttt
241 tggtttcctt ggtggtaaag attaaatttg gttgcatcat tttgacttgt gtttgagtct
301 agattttatg gcacaaggaa tggcataaac ttttcatgtg ttttggttaa aacaaaccag
361 accattgcat tgaccctgga catctttaat tgagaaattg gtaactttat tttaatatgt
421 atatctgaag aattcaagaa aacaaaggca tcctcagagg tgtgcctctt ttctttatta
481 ttagaggcaa aacgaacaat tttataggat ttgtagtgaa attataccag attataagga
541 gaaccaaaac taagtcgcaa aatttattaa tttaaggggc tctcgctttg aaagtttgag
601 agtaagttac gataggcatt tgtatccatt cattactttc ctcttttcaa ataagcaact
661 aaatagaaat gctaatctca gacttaatta tttaacagaa gagtgtacca tggaaaacct
721 ccagacaaat ttctccttgg ttcagggctc aactaaaaaa ctgaatggga tgggagatga
781 tggcagcccc ccagcgaaaa aaatgataac ggacattcat gtaaatggaa aaacgataaa
841 caaggtgcca acagttaaga aggaacactt ggatgactat ggagaagcac cagtggaaac
901 tgatggagag catgttaagc gaacctgtac ttctgttcct gaaactttgc atttaaatcc
961 cagtttgaaa cacacattgg cacaattcca tttaagtagt cagagctcgc tgggtggacc
1021 agcagcattt tctgctcggc attcccaaga aagcatgtcg cctactgtat ttctgcctct
1081 tccatcacct caggttcttc ctggcccatt gctcatccct tcagatagct ccacagaact
1141 cactcagact gtgttggaag gggaatctat ttcttgtttt caagttggag gagaaaagag
1201 actctgtttg ccccaagtct taaattctgt tctccgagaa tttacactcc agcaaataaa
1261 tacagtgtgt gatgaactgt acatatattg ttcaaggtgt acttcagacc agcttcatat
1321 cttaaaggta ctgggcatac ttccattcaa tgccccatcc tgtgggctga ttacattaac
1381 tgatgcacaa agattatgta atgctttatt gcggccacga acttttcctc aaaatggtag
1441 cgtacttcct gctaaaagct cattggccca gttaaaggaa actggcagtg cctttgaagt
1501 ggagcatgaa tgcctaggca aatgtcaggg tttatttgca ccccagtttt atgttcagcc
1561 tgatgctccg tgtattcaat gtctggagtg ttgtggaatg tttgcacccc agacgtttgt
1621 gatgcattct cacagatcac ctgacaaaag aacttgccac tggggctttg aatcagctaa
1681 atggcattgc tatcttcatg tgaaccaaaa atacttagga acacctgaag aaaagaaact
1741 gaagataatt ttagaagaaa tgaaggagaa gtttagcatg agaagtggaa agagaaatca
1801 atccaaggca agttttttat atcaattttt aataatggta atggtttact ttgaaatgaa
1861 aattctatgt ttagtgtgta acttaacctg tatgttgaac attgctcatg caacaacaac
1921 aaaataccga ttgatatatt tgtattgcag tttttaggcc ataaagtgct ttgcagtatg
1981 tttcctcatt tgactttcca aacatcctgt gagagaagta agactattat tccgttttac
2041 agataaagtg aatgaagctc agagagataa aatgactttc ccaaaattat gtagccaggg
2101 agtggaggag ttagggcttc tttttttttt tttttgtgct tttagtagag gccaggtttc
2161 agcatgttgg ccaggctggt cttgaactcc tgaccgcgtg atccgcccac cttggcctcc
2221 caaagggctg ggattacatc cttgagcccc tgtgtccagc cagggcttct ttttcttatc
2281 ctctttggca cacatcttgc ttcttgacca ctacatctgt tgtttttcta ggactcgata
2341 atttgcgctt tggtgttatc tccatttgca aatggtacaa tggccacaat tcccgtgggc
2401 tcaaaacagc atttttcaga gatacaccta tgatttctga tgtttctatg tttggatatt
2461 caggcttgct caatatttga aacaaatgga aaagacatgt atctgaagaa tttgtgattt
2521 gaaaggaata acaaaaaaaa tgacagctag agtaaggaaa agttatttta aactaataaa
2581 atattaatat aaaaacctgc cgggctcagt ggctcacacc tgtaatccca acactttggg
2641 gggctgaagt aggtggatca cctgaggtca ggagtttgag accagcctgg ccaacatggt
2701 gaaatcccat ctctgctgaa aatacaaaaa ttagacggat gtggtgtcgc acacttgtaa
2761 tcccagctac tcaggagctg aggcaggaga atcgcttgaa ccccggaggc ggaggttgta
2821 gtgagccgag attgtgccat tgcgctccag cgtaggcgtc gagggaaact ccatc
//