LOCUS X00457 1048 bp mRNA linear HUM 07-OCT-2008 DEFINITION Human mRNA for SB classII histocompatibility antigen alpha-chain. ACCESSION X00457 K01506 VERSION X00457.1 KEYWORDS antigen; membrane protein; signal peptide. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1048) AUTHORS Auffray C., Lillie J.W., Arnot D.E., Grossberger D., Kappes D.J., Strominger J.L. TITLE Isotypic and allotypic variation of human class II histocompatibility antigen alpha-chain genes JOURNAL Nature 308(5957), 327-333(1984). PUBMED 6584734 FEATURES Location/Qualifiers source 1..1048 /db_xref="H-InvDB:HIT000320865_03" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" CDS <1..703 /codon_start=2 /product="SB classII histocompatibility antigen alpha- chain" /db_xref="GOA:P20036" /db_xref="H-InvDB:HIT000320865_02.4" /db_xref="HGNC:HGNC:4938" /db_xref="InterPro:IPR001003" /db_xref="InterPro:IPR003006" /db_xref="InterPro:IPR003597" /db_xref="InterPro:IPR007110" /db_xref="InterPro:IPR011162" /db_xref="InterPro:IPR013783" /db_xref="InterPro:IPR014745" /db_xref="InterPro:IPR036179" /db_xref="PDB:3LQZ" /db_xref="PDB:4P4K" /db_xref="PDB:4P4R" /db_xref="PDB:4P57" /db_xref="PDB:4P5K" /db_xref="PDB:4P5M" /db_xref="UniProtKB/Swiss-Prot:P20036" /protein_id="CAA25143.1" /translation="GAGAIKADHVSTYAAFVQTHRPTGEFMFEFDEDEMFYVDLDKKE TVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEVTVFPKEPVE LGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPS AEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGFIVGTVLII KSLRSGHDPRAQGTL" sig_peptide <1..13 /note="signal peptide fragment" misc_feature 14..265 /note="alpha 1" misc_feature 266..547 /note="alpha 2" misc_feature 548..586 /note="(CP) connecting peptide" misc_feature 587..655 /note="(TM) transmembrane region" misc_feature 656..700 /note="(CY) cytoplasmatic region" polyA_site 1048..1048 /note="polyadenylation site" BASE COUNT 255 a 285 c 248 g 260 t ORIGIN 1 aggagctggg gccatcaagg cggaccatgt gtcaacttat gccgcgtttg tacagacgca 61 tagaccaaca ggggagttta tgtttgaatt tgatgaagat gagatgttct atgtggatct 121 ggacaagaag gagaccgtct ggcatctgga ggagtttggc caagcctttt cctttgaggc 181 tcagggcggg ctggctaaca ttgctatatt gaacaacaac ttgaatacct tgatccagcg 241 ttccaaccac actcaggcca ccaacgatcc ccctgaggtg accgtgtttc ccaaggagcc 301 tgtggagctg ggccagccca acaccctcat ctgccacatt gacaagttct tcccaccagt 361 gctcaacgtc acgtggctgt gcaacgggga gctggtcact gagggtgtcg ctgagagcct 421 cttcctgccc agaacagatt acagcttcca caagttccat tacctgacct ttgtgccctc 481 agcagaggac ttctatgact gcagggtgga gcactggggc ttggaccagc cgctcctcaa 541 gcactgggag gcccaagagc caatccagat gcctgagaca acggagactg tgctctgtgc 601 cctgggcctg gtgctgggcc tagtcggctt catcgtgggc accgtcctca tcataaagtc 661 tctgcgttct ggccatgacc cccgggccca ggggaccctg tgaaatactg taaaggtgac 721 aaaatatctg aacagaagag gacttaggag agatctgaac tccagctgcc ctacaaactc 781 catctcagct tttcttctca cttcatgtga aaactactcc agtggctgac tgaattgctg 841 acccttcaag ctctgtcctt atccattacc tcaaagcagt cattccttag taaagtttcc 901 aacaaataga aattaatgac actttggtag cactaatatg gagattatcc tttcattgag 961 ccttttatcc tctgttctcc tttgaagagc ccctcactgt caccttcccg agaataccct 1021 aagaccaata aatacttcag tatttcag //