LOCUS HSU89867 1791 bp mRNA linear HUM 12-NOV-1997 DEFINITION Human nuclear matrix protein 55 (nmt55) mRNA, complete cds. ACCESSION U89867 VERSION U89867.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1791) AUTHORS Traish,A.M., Huang,Y.H., Ashba,J., Pronovost,M., Pavao,M., McAneny,D.B. and Moreland,R.B. TITLE Loss of expression of a 55 kDa nuclear protein (nmt55) in estrogen receptor-negative human breast cancer JOURNAL Diagn. Mol. Pathol. 6 (4), 209-221 (1997) PUBMED 9360842 REFERENCE 2 (bases 1 to 1791) AUTHORS Moreland,R.B. and Traish,A.M. TITLE Direct Submission JOURNAL Submitted (15-FEB-1997) Boston University School of Medicine, Rm W607A, 700 Albany Street, Boston, MA 02118-2394, USA FEATURES Location/Qualifiers source 1..1791 /db_xref="H-InvDB:HIT000222143" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="X" /map="Xq13" /cell_line="MCF-7" /tissue_type="breast tumor" /clone_lib="made by Mark Sobel, M.D., NCI" gene 1..1791 /gene="nmt55" CDS 86..1501 /gene="nmt55" /function="putative RNA splicing factor; associates with PSF" /note="lost in estrogen receptor negative breast tumors" /codon_start=1 /product="nuclear matrix protein 55" /protein_id="AAC51852.1" /translation="MQSNKTFNLEKQNHTPRKHHQHHHQQQHHQQQQQQPPPPPIPAN GQQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGE VFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLTVRNLPQYVS NELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSFLLTTF PRPVTVEPMDQLDDEEGLPEKLVIKNQQFHKEREQPPRFAQPGSFEYEYAMRWKALIE MEKQQQDQVDRNIKEAREKLEMEMEAARHEHQVMLMRQDLMRRQEELRRMEELHNQEV QKRKQLELRQEEERRRREEEMRRQQEEMMRRQQEGFKGTFPDAREQEIRMGQMAMGGA MGINNRGAMPPAPVPAGTPAPPGPATMMPDGTLGLTPPTTERFGQAATMEGIGAIGGT PPAFNRAAPGAEFAPNKRRRY" misc_feature 312..770 /gene="nmt55" /note="similar to RNA binding domains" misc_feature 945..1091 /gene="nmt55" /note="similar to oct2 transcription factor helix-turn-helix domains" BASE COUNT 521 a 401 c 499 g 370 t ORIGIN 1 agataccagt cggtagagga gaagtcgagg ttagagggaa ctgggaggca ctttgctgtc 61 tgcaatcgaa gttgagggtg caaaaatgca gagtaataaa acttttaact tggagaagca 121 aaaccatact ccaagaaagc atcatcaaca tcaccaccag cagcagcacc accagcagca 181 acagcagcag ccgccaccac cgccaatacc tgcaaatggg caacaggcca gcagccaaaa 241 tgaaggcttg actattgacc tgaagaattt tagaaaacca ggagagaaga ccttcaccca 301 acgaagccgt ctttttgtgg gaaatcttcc tcccgacatc actgaggaag aaatgaggaa 361 actatttgag aaatatggaa aggcaggcga agtcttcatt cataaggata aaggatttgg 421 ctttatccgc ttggaaaccc gaaccctagc ggagattgcc aaagtggagc tggacaatat 481 gccactccgt ggaaagcagc tgcgtgtgcg ctttgcctgc catagtgcat cccttacagt 541 tcgaaacctt cctcagtatg tgtccaacga actgctggaa gaagcctttt ctgtgtttgg 601 ccaggtagag agggctgtag tcattgtgga tgatcgagga aggccctcag gaaaaggcat 661 tgttgagttc tcagggaagc cagctgctcg gaaagctctg gacagatgca gtgaaggctc 721 cttcctgcta accacatttc ctcgtcctgt gactgtggag cccatggacc agttagatga 781 tgaagaggga cttccagaga agctggttat aaaaaaccag caatttcaca aggaacgaga 841 gcagccaccc agatttgcac agcctggctc ctttgagtat gaatatgcca tgcgctggaa 901 ggcactcatt gagatggaga agcagcagca ggaccaagtg gaccgcaaca tcaaggaggc 961 tcgtgagaag ctggagatgg agatggaagc tgcacgccat gagcaccagg tcatgctaat 1021 gagacaggat ttgatgaggc gccaagaaga acttcggagg atggaagagc tgcacaacca 1081 agaggtgcaa aaacgaaagc aactggagct caggcaggag gaagagcgca ggcgccgtga 1141 agaagagatg cggcggcagc aagaagaaat gatgcggcga cagcaggaag gattcaaggg 1201 aaccttccct gatgcgagag agcaggagat tcggatgggt cagatggcta tgggaggtgc 1261 tatgggcata aacaacagag gtgccatgcc ccctgctcct gtgccagctg gtaccccagc 1321 tcctccagga cctgccacta tgatgccgga tggaactttg ggattgaccc caccaacaac 1381 tgaacgcttt ggtcaggctg ctacaatgga aggaattggg gcaattggtg gaactcctcc 1441 tgcattcaac cgtgcagctc ctggagctga atttgcccca aacaaacgtc gccgatacta 1501 ataagttgca gtgtctagtt tctcaaaacc cttaaaagaa ggaccctttt tggactagcc 1561 agaattctac cctggaaaag tgttagggat tccttccaat agttagatct accctgcctg 1621 tactactcta gggagtatgc tggaggcaga gggcaaggga ggggtggtat taaacaagtc 1681 aattctgtgt ggtatattgt ttaatcagtt ctgtgtggtg cattcctgaa gtctctaatg 1741 tgactgttgg aaagggcctg gggaaaccat ggcaaagtgg atccagttag a //